Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03504 and RBAM_021660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:44
# Commandline: needle
# -asequence dna-align/BSNT_03504___yqkK.1.9828.seq
# -bsequence dna-align/RBAM_021660___yqkK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03504___yqkK-RBAM_021660___yqkK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03504___yqkK-RBAM_021660___yqkK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03504___yqkK
# 2: RBAM_021660___yqkK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 238
# Identity: 156/238 (65.5%)
# Similarity: 156/238 (65.5%)
# Gaps: 32/238 (13.4%)
# Score: 491.0
#
#
#=======================================
BSNT_03504___ 1 ATGGCAAAAAGCCAAGCGAAAAAGAAGCGGGAGCATCGATTGAGAAACGG 50
|||||.||.|||.||.|||||||.|.|||||||||||.....|||||||
RBAM_021660__ 1 ATGGCGAAGAGCAAAACGAAAAAAATGCGGGAGCATCTCAAAAGAAACG- 49
BSNT_03504___ 51 CGGA--CGTGACGTCTTATTATCAAGAGGCAGCACACCATCTTTCAGCAC 98
||| |||||||...|..|.|||||.||.|...|.||.|||||||||||
RBAM_021660__ 50 -GGATGCGTGACGCAGTCCTGTCAAGGGGGACGGCGCCGTCTTTCAGCAC 98
BSNT_03504___ 99 ACATGAAAGATTAACAAAAAGCAAAAAAGAGATTTT-----GAATAAACG 143
.|||||||||.|.||.||||.|||||||||.|...| |||||
RBAM_021660__ 99 CCATGAAAGAGTGACGAAAACCAAAAAAGACAGGCTTGAAAGAATA---- 144
BSNT_03504___ 144 GAAGCATAA------GAATCCTTATGATCATACAGCAGTTGATGATAAGG 187
|||||||| |||.||.||||||| ||.|.|| ||||||...||
RBAM_021660__ 145 -AAGCATAAAAAAAGGAACCCCTATGATC--ACCGGAG-TGATGACGGGG 190
BSNT_03504___ 188 ---ATTTTTTTGTGCCCCAAAAAGCCGCCTAG------ 216
.|||||||.|||||.||.....|||||..
RBAM_021660__ 191 GTTCTTTTTTTATGCCCGAATCTCGCGCCTTTCTATGA 228
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