Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03489 and RBAM_021560

See DNA alignment / Visit BSNT_03489 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:43
# Commandline: needle
#    -asequence pep-align/BSNT_03489___sigF.1.9828.seq
#    -bsequence pep-align/RBAM_021560___sigF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03489___sigF-RBAM_021560___sigF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03489___sigF-RBAM_021560___sigF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03489___sigF
# 2: RBAM_021560___sigF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     246/255 (96.5%)
# Similarity:   251/255 (98.4%)
# Gaps:           0/255 ( 0.0%)
# Score: 1239.0
# 
#
#=======================================

BSNT_03489___      1 MDVEVKKNGKNAQLKDHEVKELIKQSQNGDQQARDLLIEKNMRLVWSVVQ     50
                     ||||||||.|||||||||||||||:||.||||||||||||||||||||||
RBAM_021560__      1 MDVEVKKNSKNAQLKDHEVKELIKKSQEGDQQARDLLIEKNMRLVWSVVQ     50

BSNT_03489___     51 RFLNRGYEPDDLFQIGCIGLLKSVDKFDLTYDVRFSTYAVPMIIGEIQRF    100
                     |||||||||||||||||||||||||||||:||||||||||||||||||||
RBAM_021560__     51 RFLNRGYEPDDLFQIGCIGLLKSVDKFDLSYDVRFSTYAVPMIIGEIQRF    100

BSNT_03489___    101 IRDDGTVKVSRSLKELGNKIRRAKDELSKTLGRVPTVQEIADHLEIEAED    150
                     ||||||||||||||||||||||||||||||.|||||||||||||||:|||
RBAM_021560__    101 IRDDGTVKVSRSLKELGNKIRRAKDELSKTYGRVPTVQEIADHLEIDAED    150

BSNT_03489___    151 VVLAQEAVRAPSSIHETVYENDGDPITLLDQIADNSEEKWFDKIALKEAI    200
                     ||||||||||||||||||||||||||||||||||:|||||||||||||||
RBAM_021560__    151 VVLAQEAVRAPSSIHETVYENDGDPITLLDQIADHSEEKWFDKIALKEAI    200

BSNT_03489___    201 SDLEEREKLIVYLRYYKDQTQSEVAERLGISQVQVSRLEKKILKQIKVQM    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_021560__    201 SDLEEREKLIVYLRYYKDQTQSEVAERLGISQVQVSRLEKKILKQIKVQM    250

BSNT_03489___    251 DHTDG    255
                     |||:.
RBAM_021560__    251 DHTES    255


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