Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03489 and RBAM_021560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:43
# Commandline: needle
# -asequence dna-align/BSNT_03489___sigF.1.9828.seq
# -bsequence dna-align/RBAM_021560___sigF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03489___sigF-RBAM_021560___sigF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03489___sigF-RBAM_021560___sigF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03489___sigF
# 2: RBAM_021560___sigF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 769
# Identity: 645/769 (83.9%)
# Similarity: 645/769 (83.9%)
# Gaps: 2/769 ( 0.3%)
# Score: 2727.0
#
#
#=======================================
BSNT_03489___ 1 ATGGATGTGGAGGTTAAGAAAAACGGCAAAAACGCTCAGCTGAAGGATCA 50
||||||||||||||||||||||||.||||||||||.|||||.|||||.||
RBAM_021560__ 1 ATGGATGTGGAGGTTAAGAAAAACAGCAAAAACGCGCAGCTCAAGGACCA 50
BSNT_03489___ 51 TGAAGTAAAGGAATTAATCAAACAAAGCCAAAATGGCGACCAGCAGGCAA 100
||||||.||.||||||||||||.|.||||||.|.||||||||||||||||
RBAM_021560__ 51 TGAAGTCAAAGAATTAATCAAAAAGAGCCAAGAGGGCGACCAGCAGGCAA 100
BSNT_03489___ 101 GAGACCTCCTCATAGAAAAAAACATGCGTCTTGTTTGGTCTGTCGTACAG 150
||||||||||||||||||||||||||||||||||.|||||.|||||.||.
RBAM_021560__ 101 GAGACCTCCTCATAGAAAAAAACATGCGTCTTGTGTGGTCCGTCGTTCAA 150
BSNT_03489___ 151 CGGTTTTTAAACAGAGGATATGAGCCTGACGATCTCTTCCAGATCGGCTG 200
.||||.|||||||||||.||||||||.||.|||||.||.|||||||||||
RBAM_021560__ 151 AGGTTCTTAAACAGAGGCTATGAGCCGGATGATCTGTTTCAGATCGGCTG 200
BSNT_03489___ 201 CATCGGGCTGTTAAAATCTGTTGACAAATTTGATTTAACCTATGATGTGC 250
.|||||..||||||||||.|||||.|||||.|||||..||||||||||.|
RBAM_021560__ 201 TATCGGATTGTTAAAATCCGTTGATAAATTCGATTTGTCCTATGATGTCC 250
BSNT_03489___ 251 GTTTTTCAACGTATGCAGTGCCGATGATTATCGGAGAAATCCAACGATTT 300
||||||||||.|||||.||||||||||||||||||||||||||.||.||.
RBAM_021560__ 251 GTTTTTCAACTTATGCCGTGCCGATGATTATCGGAGAAATCCAGCGCTTC 300
BSNT_03489___ 301 ATCCGTGATGACGGAACCGTAAAGGTATCACGGTCATTAAAAGAGCTTGG 350
|||||.||||||||||||||.||.||.|||.|.||.|||||||||||.||
RBAM_021560__ 301 ATCCGCGATGACGGAACCGTCAAAGTTTCAAGATCTTTAAAAGAGCTCGG 350
BSNT_03489___ 351 AAACAAAATCCGGCGCGCGAAGGATGAGCTTTCGAAAACACTGGGCAGAG 400
.||.|||||.||.||.|||||.|||||.||.||.||||||...||.||||
RBAM_021560__ 351 CAATAAAATACGCCGGGCGAAAGATGAACTGTCAAAAACATACGGAAGAG 400
BSNT_03489___ 401 TGCCGACGGTGCAGGAGATCGCTGACCATTTGGAGATTGAAGCTGAGGAT 450
|||||||.||.|||||.|||||.||||||||.||.|||||.||.||||||
RBAM_021560__ 401 TGCCGACCGTCCAGGAAATCGCGGACCATTTAGAAATTGATGCGGAGGAT 450
BSNT_03489___ 451 GTTGTACTGGCCCAAGAGGCGGTAAGGGCTCCATCTTCGATTCACGAAAC 500
||.||.||.||.||.||.|||||..||||.||.||.||.|||||.||.||
RBAM_021560__ 451 GTGGTGCTTGCGCAGGAAGCGGTGCGGGCGCCTTCATCCATTCATGAGAC 500
BSNT_03489___ 501 CGTTTATGAAAATGACGGAGATCCGATTACCCTGCTTGATCAAATCGCTG 550
|||.|||||||||||||||||.|||||.||||||||||||||.|||||.|
RBAM_021560__ 501 CGTGTATGAAAATGACGGAGACCCGATCACCCTGCTTGATCAGATCGCCG 550
BSNT_03489___ 551 ACAACTCAGAAGAAAAATGGTTTGACAAAATTGCGCTGAAAGAAGCAATC 600
|..|.||||||||.||.||||||||||||||.||.||.||.||.||.|||
RBAM_021560__ 551 ATCATTCAGAAGAGAAGTGGTTTGACAAAATCGCCCTCAAGGAGGCGATC 600
BSNT_03489___ 601 AGCGATTTGGAGGAAAGGGAAAAACTAATCGTCTATCTCAGATATTATAA 650
||.||||||||.|||.||||||||||.||.||||||||.|||||||||||
RBAM_021560__ 601 AGTGATTTGGAAGAACGGGAAAAACTCATTGTCTATCTGAGATATTATAA 650
BSNT_03489___ 651 AGACCAGACACAGTCCGAGGTGGCTGAGCGGCTCGGGATCTCTCAGGTGC 700
|||.|||||||||||.||.||.||.||.|||||||||||.||.||.||.|
RBAM_021560__ 651 AGATCAGACACAGTCGGAAGTAGCCGAACGGCTCGGGATTTCCCAAGTCC 700
BSNT_03489___ 701 AGGTTTCCAGGCTTGAAAAGAAAATATTAAAACAGATCAAGGTTCAAATG 750
||||.||.|||||.||.||.|||||||||||.|||||.||.||.||.|||
RBAM_021560__ 701 AGGTATCGAGGCTGGAGAAAAAAATATTAAAGCAGATTAAAGTGCAGATG 750
BSNT_03489___ 751 GATCATACGGATGGCTAG- 768
|||||||||||..||| |
RBAM_021560__ 751 GATCATACGGAAAGCT-GA 768
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