Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03477 and RBAM_021470

See DNA alignment / Visit BSNT_03477 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence pep-align/BSNT_03477___ypuA.1.9828.seq
#    -bsequence pep-align/RBAM_021470___ypuA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03477___ypuA-RBAM_021470___ypuA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03477___ypuA-RBAM_021470___ypuA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03477___ypuA
# 2: RBAM_021470___ypuA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 300
# Identity:     244/300 (81.3%)
# Similarity:   273/300 (91.0%)
# Gaps:          10/300 ( 3.3%)
# Score: 1247.0
# 
#
#=======================================

BSNT_03477___      1 MKKIWIGMLAAAVLLLTVPKVSLADAAVGDVIVTLGADLSESDKQKVLDE     50
                     |||:|||:|||||:|.|:||:|||||||||||||||||||..::||||||
RBAM_021470__      1 MKKMWIGLLAAAVVLCTIPKISLADAAVGDVIVTLGADLSNENRQKVLDE     50

BSNT_03477___     51 MNVPDNATTVTVTNKEEHEYLGKYISNAQIGSRAISSSSITIAKKGSGLN    100
                     :||||||..||||||||||||||||||||||:|||||||||:|||||||:
RBAM_021470__     51 LNVPDNAIKVTVTNKEEHEYLGKYISNAQIGTRAISSSSITVAKKGSGLD    100

BSNT_03477___    101 VETHNISGITDEMYLNALMTAGVKDAKVYVTAPFEVSGTAALTGLIKAYE    150
                     |:||||:.||||||||||||||||||||||||||||||||||||:|||||
RBAM_021470__    101 VKTHNINSITDEMYLNALMTAGVKDAKVYVTAPFEVSGTAALTGIIKAYE    150

BSNT_03477___    151 VSSDEAISEDVKQVANQELVTTSELGDKIGNENAAALIAKIKEEFAKNGV    200
                     ||||:||||||||||||||||||.||||||::||:||||.||::||||||
RBAM_021470__    151 VSSDKAISEDVKQVANQELVTTSNLGDKIGDKNASALIANIKDDFAKNGV    200

BSNT_03477___    201 PDNKADIEKQVDDAASDLNVTLTDSQKNQLVSLFNKMKNADIDWGQVSDQ    250
                     ||.|..|.|:||||||:||:||||:||:||||||||||||.||||||..|
RBAM_021470__    201 PDTKEGIGKKVDDAASNLNITLTDAQKDQLVSLFNKMKNAKIDWGQVGSQ    250

BSNT_03477___    251 LDKAKDKITKFIESDEGKNFIQKVIDFFVSIWNAIVSIFK----------    290
                     ||||||||||||:|||||:|:|||||||.||||||||:|.          
RBAM_021470__    251 LDKAKDKITKFIQSDEGKSFVQKVIDFFASIWNAIVSVFTGDSGSSSNNS    300


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