Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03456 and RBAM_021360

See DNA alignment / Visit BSNT_03456 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence pep-align/BSNT_03456___scpA.1.9828.seq
#    -bsequence pep-align/RBAM_021360___scpA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03456___scpA-RBAM_021360___scpA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03456___scpA-RBAM_021360___scpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03456___scpA
# 2: RBAM_021360___scpA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 251
# Identity:     223/251 (88.8%)
# Similarity:   236/251 (94.0%)
# Gaps:           0/251 ( 0.0%)
# Score: 1119.0
# 
#
#=======================================

BSNT_03456___      1 MEEYQVKIDTFEGPLDLLLHLINRLEIDIYDIPVAKITEQYLLYVHTMRV     50
                     |.|||||||||||||||||||||||||||||||||.||||||||||||:.
RBAM_021360__      1 MVEYQVKIDTFEGPLDLLLHLINRLEIDIYDIPVATITEQYLLYVHTMQE     50

BSNT_03456___     51 LELDMASEYLVMAATLLSIKSRMLLPKQEEELFEDELLEEEDPREELIEK    100
                     ||||:|||||||||||||||||||||||||||||||:|||||||:|||||
RBAM_021360__     51 LELDVASEYLVMAATLLSIKSRMLLPKQEEELFEDEMLEEEDPRDELIEK    100

BSNT_03456___    101 LIEYRKYKDAAKDLKEREEERQKSFTKPPSDLSEYAKEVKQSEQKLSVTV    150
                     ||||||||.|||||||||||||||||||||||||||||:||:||||||||
RBAM_021360__    101 LIEYRKYKTAAKDLKEREEERQKSFTKPPSDLSEYAKEIKQTEQKLSVTV    150

BSNT_03456___    151 YDMIGAFQKVLKRKKINRPMETTITRQDIPIEARMNEIVHSLKSRGTRIN    200
                     |||||||||||:||||.||.|||||||:||||.||||||.|||:.|.|||
RBAM_021360__    151 YDMIGAFQKVLQRKKITRPKETTITRQEIPIEDRMNEIVKSLKTAGRRIN    200

BSNT_03456___    201 FMDLFPYEQKEHLVVTFLAVLELMKNQLVLIEQEHNFSDIYITGSESIHG    250
                     |.:|||..||:||||||||||||||||.::||||.|||||||||||||||
RBAM_021360__    201 FTELFPSRQKDHLVVTFLAVLELMKNQQIIIEQEENFSDIYITGSESIHG    250

BSNT_03456___    251 A    251
                     |
RBAM_021360__    251 A    251


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