Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03456 and RBAM_021360

See Amino acid alignment / Visit BSNT_03456 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_03456___scpA.1.9828.seq
#    -bsequence dna-align/RBAM_021360___scpA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03456___scpA-RBAM_021360___scpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03456___scpA-RBAM_021360___scpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03456___scpA
# 2: RBAM_021360___scpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 756
# Identity:     629/756 (83.2%)
# Similarity:   629/756 (83.2%)
# Gaps:           0/756 ( 0.0%)
# Score: 2637.0
# 
#
#=======================================

BSNT_03456___      1 ATGGAAGAATATCAAGTGAAAATTGATACGTTTGAGGGCCCATTGGACCT     50
                     ||||.||||||||||||||||||||||||||||||.||||||||||||||
RBAM_021360__      1 ATGGTAGAATATCAAGTGAAAATTGATACGTTTGAAGGCCCATTGGACCT     50

BSNT_03456___     51 GCTGCTTCATTTAATCAATCGTCTTGAAATTGACATATATGATATACCTG    100
                     ||||||||||.|.||.||.|||||||||||.||||||||.||.|||||.|
RBAM_021360__     51 GCTGCTTCATCTGATTAACCGTCTTGAAATCGACATATACGACATACCCG    100

BSNT_03456___    101 TGGCGAAGATCACTGAACAATATTTATTATATGTACATACGATGCGTGTG    150
                     ||||.|..||.|||||||||||||||||||||||||||||.||||..|.|
RBAM_021360__    101 TGGCAACCATTACTGAACAATATTTATTATATGTACATACAATGCAAGAG    150

BSNT_03456___    151 CTTGAGCTCGATATGGCCAGCGAGTATTTGGTTATGGCTGCCACGCTGCT    200
                     |||||.||.|||.|.|||||.||.|||.||||.|||||.||.|||||.||
RBAM_021360__    151 CTTGAACTTGATGTCGCCAGTGAATATCTGGTCATGGCGGCGACGCTTCT    200

BSNT_03456___    201 CAGCATTAAAAGCAGAATGCTGCTCCCGAAGCAAGAGGAGGAGCTTTTTG    250
                     ||||||||||||||||||||||||.|||||.|||||.||.|||||.||||
RBAM_021360__    201 CAGCATTAAAAGCAGAATGCTGCTTCCGAAACAAGAAGAAGAGCTGTTTG    250

BSNT_03456___    251 AAGATGAATTACTTGAAGAAGAAGATCCGCGGGAGGAACTGATTGAAAAG    300
                     ||||.|||.|.||||||||||||||.||.|||||.||.||||||||||||
RBAM_021360__    251 AAGACGAAATGCTTGAAGAAGAAGACCCTCGGGACGAGCTGATTGAAAAG    300

BSNT_03456___    301 CTGATTGAGTATCGAAAATATAAAGATGCGGCGAAGGATTTAAAAGAACG    350
                     ||||||||||||.||||.||||||...||.|||||||||||||||||.||
RBAM_021360__    301 CTGATTGAGTATAGAAAGTATAAAACCGCTGCGAAGGATTTAAAAGAGCG    350

BSNT_03456___    351 GGAAGAAGAAAGACAAAAATCGTTCACGAAACCGCCGAGTGATTTGAGTG    400
                     ||||||||||||||||||.||.||.||.||.||||||||||||||.||||
RBAM_021360__    351 GGAAGAAGAAAGACAAAAGTCATTTACAAAGCCGCCGAGTGATTTAAGTG    400

BSNT_03456___    401 AATATGCAAAAGAAGTAAAACAGTCTGAGCAAAAGCTCTCTGTCACGGTC    450
                     |.||||||||||||.|.||||||.|.|||||.|||||.||.||.||.||.
RBAM_021360__    401 AGTATGCAAAAGAAATCAAACAGACGGAGCAGAAGCTGTCGGTGACCGTT    450

BSNT_03456___    451 TATGATATGATCGGAGCTTTTCAAAAAGTGCTGAAACGCAAAAAAATAAA    500
                     |||||.||||||||.||.||||||||.|||||..|.||.||||||||.|.
RBAM_021360__    451 TATGACATGATCGGCGCGTTTCAAAAGGTGCTTCAGCGTAAAAAAATCAC    500

BSNT_03456___    501 CAGGCCGATGGAAACAACAATTACAAGACAGGACATACCAATCGAAGCCA    550
                     ..||||||..|||||.||.||||||||||||||.|||||.||.||||.||
RBAM_021360__    501 GCGGCCGAAAGAAACGACCATTACAAGACAGGAAATACCGATTGAAGACA    550

BSNT_03456___    551 GAATGAACGAAATCGTGCACAGCTTGAAATCTAGAGGAACGAGAATCAAC    600
                     ||||||||||||||||..|.|||||.|||.|....||.|..|||||.|||
RBAM_021360__    551 GAATGAACGAAATCGTAAAAAGCTTAAAAACGGCGGGGAGAAGAATAAAC    600

BSNT_03456___    601 TTTATGGATCTGTTTCCATATGAGCAAAAAGAACATTTAGTAGTGACCTT    650
                     ||.|.|||.||.|||||.|.|..||||||.||.|||.|.||.|||||.||
RBAM_021360__    601 TTCACGGAGCTTTTTCCTTCTCGGCAAAAGGACCATCTCGTCGTGACGTT    650

BSNT_03456___    651 TCTAGCTGTTCTCGAGCTGATGAAAAATCAGCTGGTCCTCATTGAACAGG    700
                     |.||||.||.||.||.||||||||||||||||.|.|..||||||||||||
RBAM_021360__    651 TTTAGCAGTCCTGGAACTGATGAAAAATCAGCAGATTATCATTGAACAGG    700

BSNT_03456___    701 AGCACAATTTTTCAGATATTTACATTACGGGGAGTGAATCCATTCATGGG    750
                     |..|.||.|||||||||||.|||||||||||||||||||||||||||||.
RBAM_021360__    701 AAGAAAACTTTTCAGATATATACATTACGGGGAGTGAATCCATTCATGGC    750

BSNT_03456___    751 GCTTGA    756
                     ||||||
RBAM_021360__    751 GCTTGA    756


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.