Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03424 and RBAM_021150

See DNA alignment / Visit BSNT_03424 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence pep-align/BSNT_03424___ypbE.1.9828.seq
#    -bsequence pep-align/RBAM_021150___ypbE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03424___ypbE-RBAM_021150___ypbE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03424___ypbE-RBAM_021150___ypbE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03424___ypbE
# 2: RBAM_021150___ypbE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 259
# Identity:     133/259 (51.4%)
# Similarity:   168/259 (64.9%)
# Gaps:          26/259 (10.0%)
# Score: 561.0
# 
#
#=======================================

BSNT_03424___      1 MTNMSRVERRKAQNLYEDQNAALAD---DYVDDGESLPTRQSVKNQR---     44
                     ||.||||||||||...|.|.||.||   :|::|  |||||||||.:|   
RBAM_021150__      1 MTEMSRVERRKAQLRAEQQVAAAADEQIEYLED--SLPTRQSVKEERKKK     48

BSNT_03424___     45 -EQKKKQGKTKTPLFTVLAVIFVFVPVIVLVTLFYL-KSHPDNHDDYEDV     92
                      ||.|::.||||||||.|.|:|:.|.:.|...|.|: .|...:..|||||
RBAM_021150__     49 EEQVKEKTKTKTPLFTFLTVLFIIVTIGVFFGLLYMTNSSRFDPKDYEDV     98

BSNT_03424___     93 FIDSSQSKYEVVPKSEDKNDTADTKETALQKESKKEPEDSKPKEQTAADK    142
                     |||.|:|...|:||...|    :|.||||.::.||:.:|...||..|.:|
RBAM_021150__     99 FIDHSESAPAVIPKGAQK----ETSETALLEQPKKKSDDKDKKEAAAPEK    144

BSNT_03424___    143 KQTAVAEKEDSPNKEEA----TAAAASSSQS--TVQQQEQPAE---PVQN    183
                     .:...:||.::|::::.    |..|.:..||  .|:::..|||   ....
RBAM_021150__    145 TKEKPSEKTETPSEKQVKPTDTEYAETKQQSPPAVREKAAPAEVSDQAGT    194

BSNT_03424___    184 VPNRV--VKHTVQKKETLYRISMKYYKSRTGEEKIRAYNHLNGNDVYTGQ    231
                     ||.:|  |:||||.|||||||||||||||.||||||:||.||||||||||
RBAM_021150__    195 VPKKVRTVQHTVQPKETLYRISMKYYKSRAGEEKIRSYNGLNGNDVYTGQ    244

BSNT_03424___    232 VLDIPLMDE    240
                     ||:|||.| 
RBAM_021150__    245 VLNIPLSD-    252


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.