Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03424 and RBAM_021150

See Amino acid alignment / Visit BSNT_03424 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence dna-align/BSNT_03424___ypbE.1.9828.seq
#    -bsequence dna-align/RBAM_021150___ypbE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03424___ypbE-RBAM_021150___ypbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03424___ypbE-RBAM_021150___ypbE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03424___ypbE
# 2: RBAM_021150___ypbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 871
# Identity:     486/871 (55.8%)
# Similarity:   486/871 (55.8%)
# Gaps:         260/871 (29.9%)
# Score: 1269.5
# 
#
#=======================================

BSNT_03424___      1 ATGACGAACATGTCGAGAGTAGAGAGAAGAAAAGCCCAGAATCTTTATGA     50
                     ||||||.|.|||||.|||||.||.|||||||||||.|||   ||...||.
RBAM_021150__      1 ATGACGGAAATGTCAAGAGTTGAAAGAAGAAAAGCTCAG---CTGCGTGC     47

BSNT_03424___     51 AGATCAAAACGCCGCA--TTG--------GCGGACG-----ATT--ATGT     83
                     .||       ||.|||  |||        |||||.|     |||  ||  
RBAM_021150__     48 CGA-------GCAGCAGGTTGCCGCGGCCGCGGATGAACAAATTGAAT--     88

BSNT_03424___     84 CGATGATGGAGAAAGCCTTCCGACAAGACAATCTGTAAA----------A    123
                       ||..||.|||.|||||.||||||||||||||||||||          |
RBAM_021150__     89 --ATCTTGAAGACAGCCTCCCGACAAGACAATCTGTAAAAGAGGAGCGTA    136

BSNT_03424___    124 AATCAAAG--AGAACA---GAA--AAAAAAGCAAGGCAAAACAAAAACGC    166
                     ||..||||  |||.||   |||  ||||||     .||||||||||||||
RBAM_021150__    137 AAAAAAAGGAAGAGCAGGTGAAGGAAAAAA-----CCAAAACAAAAACGC    181

BSNT_03424___    167 CATTATTCACAGTACT---CG-------CA-----GTAATATT---TGTA    198
                     |..|.|||||..|.||   ||       ||     ||||.|.|   |||.
RBAM_021150__    182 CGCTGTTCACTTTTCTGACCGTCCTGTTCATTATCGTAACAATCGGTGTC    231

BSNT_03424___    199 TTTGTGCCGGTTATCGTTTTAGTCACCTTATTTTATCTAAAGAGCCACCC    248
                     |||.|  ||||..||                |||||.|.|.|| .||.|.
RBAM_021150__    232 TTTTT--CGGTCTTC----------------TTTATATGACGA-ACAGCA    262

BSNT_03424___    249 GGATAATCATGAC------GATTATGAAGATGTTTTTATTGACAGCAGCC    292
                     |.|.|.|  ||||      ||.|||||||||||.|||||.|||..|||..
RBAM_021150__    263 GCAGATT--TGACCCGAAGGACTATGAAGATGTCTTTATAGACCACAGTG    310

BSNT_03424___    293 AAAGCAAATATGAGGTTGTCCCGAAA-----TCAGAGGATAA-AAACGAT    336
                     |||||.....||..|||.|.||||||     |||||    || |||||  
RBAM_021150__    311 AAAGCGCGCCTGCCGTTATTCCGAAAGGCGCTCAGA----AAGAAACG--    354

BSNT_03424___    337 ACCGCAGACACTAAAGAAACCGCAC-TGCAGAAGGAGTCA----AAAAAA    381
                                 ..|||||||||.| |..||||     ||    ||||||
RBAM_021150__    355 ------------TCAGAAACCGCTCTTTTAGAA-----CAACCGAAAAAA    387

BSNT_03424___    382 GAGCCAGAAGATTCCAAGCCAAAAGAGCAAACAGCTG---CTGA------    422
                     .||.|.||.||  |.|||..||.|.|| ||.|.||||   ||||      
RBAM_021150__    388 AAGTCTGACGA--CAAAGATAAGAAAG-AAGCGGCTGCACCTGAAAAAAC    434

BSNT_03424___    423 -TAAGAAA---CAGACTG------CTGTAGCG------GAAAAAGAAG--    454
                      .||||||   || |.||      |.|.|.||      ||||||.|||  
RBAM_021150__    435 GAAAGAAAAACCA-AGTGAAAAAACGGAAACGCCCTCAGAAAAACAAGTA    483

BSNT_03424___    455 --------ACTCGCCAAATAAGGAGGA--------AGCAACCGCCG-CGG    487
                             |..|.||.||| |.|.|||        ||||..|.||| |||
RBAM_021150__    484 AAGCCGACAGACACCGAAT-ACGCGGAGACAAAACAGCAGTCTCCGCCGG    532

BSNT_03424___    488 CTGCTTCCTCTTCCCAATCAACAGTACAACAGCAAGAACAG---CCAGCT    534
                     |||        |||         ||..||.|||       |   ||.|||
RBAM_021150__    533 CTG--------TCC---------GTGAAAAAGC-------GGCTCCGGCT    558

BSNT_03424___    535 GAG------------------------CCAGTTCAAAATGTGCCGAATCG    560
                     |||                        |||   .||||.||||.||   .
RBAM_021150__    559 GAGGTGAGTGATCAAGCCGGGACTGTCCCA---AAAAAAGTGCGGA---C    602

BSNT_03424___    561 CGTTGTCA-AGCACACCGTCCAAAAGAAAGAAACGCTATACCGCATTTCC    609
                     |||    | ||||.||.||.||...||||||||||||.|||||||||||.
RBAM_021150__    603 CGT----ACAGCATACTGTACAGCCGAAAGAAACGCTTTACCGCATTTCA    648

BSNT_03424___    610 ATGAAGTATTATAAAAGCCGGACAGGAGAAGAAAAAATTCG-AGCATATA    658
                     |||||.||.||||||||||||.|.||.|||||||||||.|| ||| ||.|
RBAM_021150__    649 ATGAAATACTATAAAAGCCGGGCGGGCGAAGAAAAAATCCGCAGC-TACA    697

BSNT_03424___    659 ATC--ATCTGAATGGAAATGATGTTTACACCGGACAAGTTTTGGACATCC    706
                     | |  || |.||.|||||.||.||.||||||||.||.|||.||.||||.|
RBAM_021150__    698 A-CGGAT-TAAACGGAAACGACGTGTACACCGGCCAGGTTCTGAACATTC    745

BSNT_03424___    707 C----TTTAATGGATGAATAG    723
                     |    |.|    |||.||   
RBAM_021150__    746 CGCTGTCT----GATTAA---    759


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