Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03424 and RBAM_021150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_03424___ypbE.1.9828.seq
# -bsequence dna-align/RBAM_021150___ypbE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03424___ypbE-RBAM_021150___ypbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03424___ypbE-RBAM_021150___ypbE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03424___ypbE
# 2: RBAM_021150___ypbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 871
# Identity: 486/871 (55.8%)
# Similarity: 486/871 (55.8%)
# Gaps: 260/871 (29.9%)
# Score: 1269.5
#
#
#=======================================
BSNT_03424___ 1 ATGACGAACATGTCGAGAGTAGAGAGAAGAAAAGCCCAGAATCTTTATGA 50
||||||.|.|||||.|||||.||.|||||||||||.||| ||...||.
RBAM_021150__ 1 ATGACGGAAATGTCAAGAGTTGAAAGAAGAAAAGCTCAG---CTGCGTGC 47
BSNT_03424___ 51 AGATCAAAACGCCGCA--TTG--------GCGGACG-----ATT--ATGT 83
.|| ||.||| ||| |||||.| ||| ||
RBAM_021150__ 48 CGA-------GCAGCAGGTTGCCGCGGCCGCGGATGAACAAATTGAAT-- 88
BSNT_03424___ 84 CGATGATGGAGAAAGCCTTCCGACAAGACAATCTGTAAA----------A 123
||..||.|||.|||||.|||||||||||||||||||| |
RBAM_021150__ 89 --ATCTTGAAGACAGCCTCCCGACAAGACAATCTGTAAAAGAGGAGCGTA 136
BSNT_03424___ 124 AATCAAAG--AGAACA---GAA--AAAAAAGCAAGGCAAAACAAAAACGC 166
||..|||| |||.|| ||| |||||| .||||||||||||||
RBAM_021150__ 137 AAAAAAAGGAAGAGCAGGTGAAGGAAAAAA-----CCAAAACAAAAACGC 181
BSNT_03424___ 167 CATTATTCACAGTACT---CG-------CA-----GTAATATT---TGTA 198
|..|.|||||..|.|| || || ||||.|.| |||.
RBAM_021150__ 182 CGCTGTTCACTTTTCTGACCGTCCTGTTCATTATCGTAACAATCGGTGTC 231
BSNT_03424___ 199 TTTGTGCCGGTTATCGTTTTAGTCACCTTATTTTATCTAAAGAGCCACCC 248
|||.| ||||..|| |||||.|.|.|| .||.|.
RBAM_021150__ 232 TTTTT--CGGTCTTC----------------TTTATATGACGA-ACAGCA 262
BSNT_03424___ 249 GGATAATCATGAC------GATTATGAAGATGTTTTTATTGACAGCAGCC 292
|.|.|.| |||| ||.|||||||||||.|||||.|||..|||..
RBAM_021150__ 263 GCAGATT--TGACCCGAAGGACTATGAAGATGTCTTTATAGACCACAGTG 310
BSNT_03424___ 293 AAAGCAAATATGAGGTTGTCCCGAAA-----TCAGAGGATAA-AAACGAT 336
|||||.....||..|||.|.|||||| ||||| || |||||
RBAM_021150__ 311 AAAGCGCGCCTGCCGTTATTCCGAAAGGCGCTCAGA----AAGAAACG-- 354
BSNT_03424___ 337 ACCGCAGACACTAAAGAAACCGCAC-TGCAGAAGGAGTCA----AAAAAA 381
..|||||||||.| |..|||| || ||||||
RBAM_021150__ 355 ------------TCAGAAACCGCTCTTTTAGAA-----CAACCGAAAAAA 387
BSNT_03424___ 382 GAGCCAGAAGATTCCAAGCCAAAAGAGCAAACAGCTG---CTGA------ 422
.||.|.||.|| |.|||..||.|.|| ||.|.|||| ||||
RBAM_021150__ 388 AAGTCTGACGA--CAAAGATAAGAAAG-AAGCGGCTGCACCTGAAAAAAC 434
BSNT_03424___ 423 -TAAGAAA---CAGACTG------CTGTAGCG------GAAAAAGAAG-- 454
.|||||| || |.|| |.|.|.|| ||||||.|||
RBAM_021150__ 435 GAAAGAAAAACCA-AGTGAAAAAACGGAAACGCCCTCAGAAAAACAAGTA 483
BSNT_03424___ 455 --------ACTCGCCAAATAAGGAGGA--------AGCAACCGCCG-CGG 487
|..|.||.||| |.|.||| ||||..|.||| |||
RBAM_021150__ 484 AAGCCGACAGACACCGAAT-ACGCGGAGACAAAACAGCAGTCTCCGCCGG 532
BSNT_03424___ 488 CTGCTTCCTCTTCCCAATCAACAGTACAACAGCAAGAACAG---CCAGCT 534
||| ||| ||..||.||| | ||.|||
RBAM_021150__ 533 CTG--------TCC---------GTGAAAAAGC-------GGCTCCGGCT 558
BSNT_03424___ 535 GAG------------------------CCAGTTCAAAATGTGCCGAATCG 560
||| ||| .||||.||||.|| .
RBAM_021150__ 559 GAGGTGAGTGATCAAGCCGGGACTGTCCCA---AAAAAAGTGCGGA---C 602
BSNT_03424___ 561 CGTTGTCA-AGCACACCGTCCAAAAGAAAGAAACGCTATACCGCATTTCC 609
||| | ||||.||.||.||...||||||||||||.|||||||||||.
RBAM_021150__ 603 CGT----ACAGCATACTGTACAGCCGAAAGAAACGCTTTACCGCATTTCA 648
BSNT_03424___ 610 ATGAAGTATTATAAAAGCCGGACAGGAGAAGAAAAAATTCG-AGCATATA 658
|||||.||.||||||||||||.|.||.|||||||||||.|| ||| ||.|
RBAM_021150__ 649 ATGAAATACTATAAAAGCCGGGCGGGCGAAGAAAAAATCCGCAGC-TACA 697
BSNT_03424___ 659 ATC--ATCTGAATGGAAATGATGTTTACACCGGACAAGTTTTGGACATCC 706
| | || |.||.|||||.||.||.||||||||.||.|||.||.||||.|
RBAM_021150__ 698 A-CGGAT-TAAACGGAAACGACGTGTACACCGGCCAGGTTCTGAACATTC 745
BSNT_03424___ 707 C----TTTAATGGATGAATAG 723
| |.| |||.||
RBAM_021150__ 746 CGCTGTCT----GATTAA--- 759
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