Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03416 and RBAM_021100

See DNA alignment / Visit BSNT_03416 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:38
# Commandline: needle
#    -asequence pep-align/BSNT_03416___ypdA.1.9828.seq
#    -bsequence pep-align/RBAM_021100___ypdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03416___ypdA-RBAM_021100___ypdA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03416___ypdA-RBAM_021100___ypdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03416___ypdA
# 2: RBAM_021100___ypdA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 327
# Identity:     274/327 (83.8%)
# Similarity:   300/327 (91.7%)
# Gaps:           3/327 ( 0.9%)
# Score: 1472.0
# 
#
#=======================================

BSNT_03416___      1 MIQEKAIIIGGGPCGLSAAIHLKEIGIDALVIEKGNVVNSIYNYPTHQTF     50
                     |.:||||||||||||||||||||:||::||||||||||||||||||||||
RBAM_021100__      1 MTEEKAIIIGGGPCGLSAAIHLKQIGVNALVIEKGNVVNSIYNYPTHQTF     50

BSNT_03416___     51 FSSSEKLEIGDVAFITENRKPVRIQALSYYREVVKRKNIRVNAFEMVHKV    100
                     ||||||||||||||||||||||||||||||||||:||.:||||||.|.:|
RBAM_021100__     51 FSSSEKLEIGDVAFITENRKPVRIQALSYYREVVRRKELRVNAFETVERV    100

BSNT_03416___    101 TKTENNTFVIETSKETYKTPYCIIATGYYDHPNYMNVPGENLPKVFHYFK    150
                     ||.|:..|::||||:.|.||:|||||||||||||||:|||.|||||||||
RBAM_021100__    101 TKQEDGRFLVETSKDRYLTPFCIIATGYYDHPNYMNIPGEGLPKVFHYFK    150

BSNT_03416___    151 EGHPYFDKDVVVIGGKNSSVDAALELVKSGARVTVLYRGNEYSPSIKPWI    200
                     ||||||||||.||||||||||||||||||||||||||||:||||||||||
RBAM_021100__    151 EGHPYFDKDVAVIGGKNSSVDAALELVKSGARVTVLYRGHEYSPSIKPWI    200

BSNT_03416___    201 LPEFEALVRNGTIRMEFGACVEKITEDEVVYRSGEKELITIKNDFVFAMT    250
                     ||||||||||||||||||||:|::||||:::|||..|.:.:|||||||||
RBAM_021100__    201 LPEFEALVRNGTIRMEFGACLEEVTEDEIIFRSGRNETVRLKNDFVFAMT    250

BSNT_03416___    251 GYHPDHQFLEKIGVEIDKETGRPYFNEETMETNVEGVFIAGVIAAGNNAN    300
                     ||||||.|||||||.||.|:|||:|.||||||||:|||||||||||||||
RBAM_021100__    251 GYHPDHGFLEKIGVRIDAESGRPFFREETMETNVDGVFIAGVIAAGNNAN    300

BSNT_03416___    301 EIFIENGRFHGGHIAAEIAKRENH---    324
                     ||||||||||||.||.||:||...   
RBAM_021100__    301 EIFIENGRFHGGLIANEISKRLGAESI    327


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