Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03416 and RBAM_021100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence pep-align/BSNT_03416___ypdA.1.9828.seq
# -bsequence pep-align/RBAM_021100___ypdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03416___ypdA-RBAM_021100___ypdA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03416___ypdA-RBAM_021100___ypdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03416___ypdA
# 2: RBAM_021100___ypdA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 327
# Identity: 274/327 (83.8%)
# Similarity: 300/327 (91.7%)
# Gaps: 3/327 ( 0.9%)
# Score: 1472.0
#
#
#=======================================
BSNT_03416___ 1 MIQEKAIIIGGGPCGLSAAIHLKEIGIDALVIEKGNVVNSIYNYPTHQTF 50
|.:||||||||||||||||||||:||::||||||||||||||||||||||
RBAM_021100__ 1 MTEEKAIIIGGGPCGLSAAIHLKQIGVNALVIEKGNVVNSIYNYPTHQTF 50
BSNT_03416___ 51 FSSSEKLEIGDVAFITENRKPVRIQALSYYREVVKRKNIRVNAFEMVHKV 100
||||||||||||||||||||||||||||||||||:||.:||||||.|.:|
RBAM_021100__ 51 FSSSEKLEIGDVAFITENRKPVRIQALSYYREVVRRKELRVNAFETVERV 100
BSNT_03416___ 101 TKTENNTFVIETSKETYKTPYCIIATGYYDHPNYMNVPGENLPKVFHYFK 150
||.|:..|::||||:.|.||:|||||||||||||||:|||.|||||||||
RBAM_021100__ 101 TKQEDGRFLVETSKDRYLTPFCIIATGYYDHPNYMNIPGEGLPKVFHYFK 150
BSNT_03416___ 151 EGHPYFDKDVVVIGGKNSSVDAALELVKSGARVTVLYRGNEYSPSIKPWI 200
||||||||||.||||||||||||||||||||||||||||:||||||||||
RBAM_021100__ 151 EGHPYFDKDVAVIGGKNSSVDAALELVKSGARVTVLYRGHEYSPSIKPWI 200
BSNT_03416___ 201 LPEFEALVRNGTIRMEFGACVEKITEDEVVYRSGEKELITIKNDFVFAMT 250
||||||||||||||||||||:|::||||:::|||..|.:.:|||||||||
RBAM_021100__ 201 LPEFEALVRNGTIRMEFGACLEEVTEDEIIFRSGRNETVRLKNDFVFAMT 250
BSNT_03416___ 251 GYHPDHQFLEKIGVEIDKETGRPYFNEETMETNVEGVFIAGVIAAGNNAN 300
||||||.|||||||.||.|:|||:|.||||||||:|||||||||||||||
RBAM_021100__ 251 GYHPDHGFLEKIGVRIDAESGRPFFREETMETNVDGVFIAGVIAAGNNAN 300
BSNT_03416___ 301 EIFIENGRFHGGHIAAEIAKRENH--- 324
||||||||||||.||.||:||...
RBAM_021100__ 301 EIFIENGRFHGGLIANEISKRLGAESI 327
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