Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03416 and RBAM_021100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:38
# Commandline: needle
# -asequence dna-align/BSNT_03416___ypdA.1.9828.seq
# -bsequence dna-align/RBAM_021100___ypdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03416___ypdA-RBAM_021100___ypdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03416___ypdA-RBAM_021100___ypdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03416___ypdA
# 2: RBAM_021100___ypdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity: 756/1003 (75.4%)
# Similarity: 756/1003 (75.4%)
# Gaps: 47/1003 ( 4.7%)
# Score: 2795.0
#
#
#=======================================
BSNT_03416___ 1 ATGATTCAAGAAAAAGCAATTATTATAGGCGGAGGGCCTTGCGGACTATC 50
||||...||||||||||||||||.|||||||||||.|||||||||.||||
RBAM_021100__ 1 ATGACAGAAGAAAAAGCAATTATAATAGGCGGAGGTCCTTGCGGATTATC 50
BSNT_03416___ 51 CGCTGCCATTCACCTAAAAGAAATTGGCATTGATGCCCTCGTCATCGAAA 100
.||.||.||.||.||.||..||||||||.|..|.||.||.||.|||||||
RBAM_021100__ 51 GGCGGCTATACATCTGAAGCAAATTGGCGTGAACGCGCTTGTGATCGAAA 100
BSNT_03416___ 101 AAGGCAATGTCGTTAACAGTATTTACAATTATCCGACGCATCAAACCTTT 150
||||.||||||||.|||||.|||||.||.||||||||.||.|||||.|||
RBAM_021100__ 101 AAGGGAATGTCGTAAACAGCATTTATAACTATCCGACCCACCAAACTTTT 150
BSNT_03416___ 151 TTCAGCTCAAGTGAAAAGCTCGAAATCGGAGATGTGGCATTTATTACGGA 200
|||||.|||||||||||..|.||.|||||.|||||.||.|||||||||||
RBAM_021100__ 151 TTCAGTTCAAGTGAAAAATTGGAGATCGGCGATGTCGCCTTTATTACGGA 200
BSNT_03416___ 201 AAACAGGAAGCCTGTCAGAATTCAGGCTTTATCGTATTACCGAGAAGTCG 250
||||||.||.||.|||.||||.||||||.|.||.||.|||.||||.||.|
RBAM_021100__ 201 AAACAGAAAACCGGTCCGAATACAGGCTCTCTCTTACTACAGAGAGGTTG 250
BSNT_03416___ 251 TCAAACGGAAAAACATCCGTGTTAACGCATTTGAAATGGTGCATAAAGTG 300
|||.|.|.|||.|..|.||.||.|||||.|||||||.||||.|....||.
RBAM_021100__ 251 TCAGAAGAAAAGAGCTGCGCGTAAACGCCTTTGAAACGGTGGAGCGCGTA 300
BSNT_03416___ 301 ACGAAAACGGAAAA------TAATACATTTGTTATTGAGACGTCAAAAGA 344
||||||..||||.| | |||.||.|.||.||.||||||||
RBAM_021100__ 301 ACGAAACAGGAAGACGGCCGT------TTTCTTGTAGAAACATCAAAAGA 344
BSNT_03416___ 345 GACCTACAAGACGCCATATTGTATCATCGCCACAGGCTATTATGATCATC 394
...||||...||.||.|.|||||||||.||.|||||.|||||||||||||
RBAM_021100__ 345 CCGCTACCTCACTCCGTTTTGTATCATTGCGACAGGATATTATGATCATC 394
BSNT_03416___ 395 CAAACTATATGAATGTACCCGGTGA--GAATTTGCCGAAAGTATTTCATT 442
|.||.||||||||..||||.||||| |..|| ||.||.||||||||||
RBAM_021100__ 395 CGAATTATATGAACATACCGGGTGAAGGGCTT--CCTAAGGTATTTCATT 442
BSNT_03416___ 443 ATTTTAAAGAAGGCCACCCGTATTTTGATAAAGATGTTGTTGTCATCGGC 492
|.||||||||||||||.||.|||||||||||||||||||.|||.||||||
RBAM_021100__ 443 ACTTTAAAGAAGGCCATCCTTATTTTGATAAAGATGTTGCTGTGATCGGC 492
BSNT_03416___ 493 GGGAAAAATTCAAGCGTGGATGCTGCCCTTGAACTCGTGAAATCTGGGGC 542
||||||||.|||||.|||||.||.||..|.|||||.|||||.||.||.||
RBAM_021100__ 493 GGGAAAAACTCAAGTGTGGACGCGGCTTTGGAACTGGTGAAGTCCGGCGC 542
BSNT_03416___ 543 GCGTGTCACAGTTTTATATAGGGGCAATGAGTATTCTCCAAGCATTAAGC 592
|||.|||||.||..|.||.||.||..|||||||.||.||.|||||.||||
RBAM_021100__ 543 GCGAGTCACGGTGCTCTACAGAGGACATGAGTACTCCCCGAGCATCAAGC 592
BSNT_03416___ 593 CGTGGATTCTGCCGGAATTTGAAGCCCTCGTCAGAAACGGTACAATCCGT 642
|||||||||||||.||.|||||.|||||||||||||||||.||||||||.
RBAM_021100__ 593 CGTGGATTCTGCCTGAGTTTGAGGCCCTCGTCAGAAACGGCACAATCCGG 642
BSNT_03416___ 643 ATGGAATTTGGCGCGTGTGTCGAAAAAATCACTGAGGATGAAGTTGTGTA 692
||||||||.|||||.|||.|.|||.||.|.||.||.||||||.|..|.|.
RBAM_021100__ 643 ATGGAATTCGGCGCTTGTCTTGAAGAAGTGACGGAAGATGAAATCATTTT 692
BSNT_03416___ 693 TCGCTCCGG-AGAGAAAGA-AC--TCATTACC--ATTAAAAATGATTTTG 736
.|||||||| .|| ||.|| || | || .|.|||||.|||||.|
RBAM_021100__ 693 CCGCTCCGGCCGA-AATGAGACGGT-----CCGGCTGAAAAACGATTTCG 736
BSNT_03416___ 737 TATTTGCCATGACAGGCTATCATCCCGATCATCAATTT-CTTGAAAAAAT 785
|||||||||||||.||.||.||||||||||| |..||| ||.||||||||
RBAM_021100__ 737 TATTTGCCATGACGGGATACCATCCCGATCA-CGGTTTCCTCGAAAAAAT 785
BSNT_03416___ 786 TGGTGTTGAAATTGATAAAGAAACAGGGCGTCCATATTTCAACGAAGAAA 835
.|||||....||||||...|||.||||.||.||.|.||||...|||||||
RBAM_021100__ 786 CGGTGTGCGGATTGATGCGGAATCAGGCCGGCCGTTTTTCCGGGAAGAAA 835
BSNT_03416___ 836 CGATGGAAACGAACGTTGAAGGTGTCTTTATTGCCGGGGTTATTGCTGCG 885
||||||||||.||.|||||.|||||.|||||.|||||.||.|||||.||.
RBAM_021100__ 836 CGATGGAAACAAATGTTGACGGTGTTTTTATCGCCGGAGTCATTGCGGCT 885
BSNT_03416___ 886 GGAAACAATGCAAATGAAATATTTATTGAAAACGGCAGGTTTCACGGGGG 935
|||||.||.||.||.|||||.|||||.||.||||||.|.|||||| ||.|
RBAM_021100__ 886 GGAAATAACGCCAACGAAATTTTTATCGAGAACGGCCGTTTTCAC-GGCG 934
BSNT_03416___ 936 GCAT-ATCGCAGCGGAAATCGCCAAA-----------AGAGAAAACCAT- 972
||.| ||||||...|||||..|.||| |||| |.|||
RBAM_021100__ 935 GCTTGATCGCAAATGAAATATCAAAACGGCTGGGTGCAGAG---AGCATA 981
BSNT_03416___ 973 TAA 975
|.|
RBAM_021100__ 982 TGA 984
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