Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03393 and RBAM_020980

See DNA alignment / Visit BSNT_03393 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:36
# Commandline: needle
#    -asequence pep-align/BSNT_03393___yphE.1.9828.seq
#    -bsequence pep-align/RBAM_020980___yphE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03393___yphE-RBAM_020980___yphE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03393___yphE-RBAM_020980___yphE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03393___yphE
# 2: RBAM_020980___yphE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 67
# Identity:      44/67 (65.7%)
# Similarity:    56/67 (83.6%)
# Gaps:           4/67 ( 6.0%)
# Score: 242.0
# 
#
#=======================================

BSNT_03393___      1 MNLALMKMWFALGSMGLMFLAVASIYLSRFKCQNRFLKITISSFAYMCML     50
                         :||||||||:|||||:||||||:||:|.:|:.:|..:||.||.||:
RBAM_020980__      1 ----MMKMWFALGAMGLMFVAVASIYVSRYKVKNKLIKAAVSSLAYACMV     46

BSNT_03393___     51 ISGIIVFVVVFSGPVNE     67
                     |||:||.:|||||||||
RBAM_020980__     47 ISGLIVLMVVFSGPVNE     63


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.