Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03393 and RBAM_020980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:36
# Commandline: needle
# -asequence dna-align/BSNT_03393___yphE.1.9828.seq
# -bsequence dna-align/RBAM_020980___yphE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03393___yphE-RBAM_020980___yphE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03393___yphE-RBAM_020980___yphE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03393___yphE
# 2: RBAM_020980___yphE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 216
# Identity: 140/216 (64.8%)
# Similarity: 140/216 (64.8%)
# Gaps: 36/216 (16.7%)
# Score: 461.5
#
#
#=======================================
BSNT_03393___ 1 TTGAATCTGGCATTGATGAAAATGTGGTTTGCACTAGGGTCCATGGGTCT 50
||||||||||||||||||||.||.||..|.|||||..|
RBAM_020980__ 1 ------------TTGATGAAAATGTGGTTTGCGCTTGGTGCTATGGGATT 38
BSNT_03393___ 51 GATGTTTCTGGCTGTAGCTTCCATCTATTTAAGCCGCT-TTAAGTGCCAA 99
.||||||.|.||.||.||.||.||.|||.|.|||.|.| ..||||| ||
RBAM_020980__ 39 AATGTTTGTTGCGGTGGCCTCTATTTATGTCAGCAGGTACAAAGTG--AA 86
BSNT_03393___ 100 AACCGTTTTTTGAA---GATTA------CGATTTCATCATTCGCATACAT 140
||.| || |||.| ||.||||.|||.||||.| ||
RBAM_020980__ 87 AAAC--------AAACTGATAAAAGCAGCGGTTTCTTCACTCGCTT--AT 126
BSNT_03393___ 141 G--TGTATGCTCATATCTGGAATTATTGTGTTTGTCGTGGTTTTTAGCGG 188
| ||.|||.||||.||.|||.|.||.|||||..|.||.|||||.|||||
RBAM_020980__ 127 GCCTGCATGGTCATCTCGGGATTGATCGTGTTAATGGTCGTTTTCAGCGG 176
BSNT_03393___ 189 CCCTGTCAATGAATAA 204
.|||||||||||||||
RBAM_020980__ 177 GCCTGTCAATGAATAA 192
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