Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03378 and RBAM_020880

See DNA alignment / Visit BSNT_03378 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:35
# Commandline: needle
#    -asequence pep-align/BSNT_03378___cheR.1.9828.seq
#    -bsequence pep-align/RBAM_020880___cheR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03378___cheR-RBAM_020880___cheR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03378___cheR-RBAM_020880___cheR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03378___cheR
# 2: RBAM_020880___cheR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     208/256 (81.2%)
# Similarity:   233/256 (91.0%)
# Gaps:           0/256 ( 0.0%)
# Score: 1102.0
# 
#
#=======================================

BSNT_03378___      1 MDTYSVFTTKWKQLTGVDLTLYKEAQMKRRLTSLYEKKGFQSFKDFAAAL     50
                     |:.|.:|.|||||:|||||:||||||||||||||||||||:.|::|||||
RBAM_020880__      1 MEPYDIFITKWKQITGVDLSLYKEAQMKRRLTSLYEKKGFRDFQEFAAAL     50

BSNT_03378___     51 EKEQALLNETLDRMTINVSEFYRNYKRWEVLETAILPLIKTSRPLKIWSA    100
                     ||::.||||||||||||||||||||||||||||:||||||.::|||||||
RBAM_020880__     51 EKDKLLLNETLDRMTINVSEFYRNYKRWEVLETSILPLIKHNKPLKIWSA    100

BSNT_03378___    101 ACSTGEEPYTLAMLLDQQKGLPGYQILATDIDEKALEKAKKGVYQERSLQ    150
                     |||||||||||||:|:||.||.|:.|||||||||||.|||:|:|||||||
RBAM_020880__    101 ACSTGEEPYTLAMILNQQTGLAGFDILATDIDEKALSKAKRGIYQERSLQ    150

BSNT_03378___    151 EVPLSVKDRYFTQNANRSYEVKTEIKKNITFKKHNLLADRYEQDFDLIVC    200
                     |||.|||.||||:.|:.||:||.||:.||.||:||||||.||||||||||
RBAM_020880__    151 EVPASVKSRYFTKQADNSYQVKQEIQNNIRFKRHNLLADSYEQDFDLIVC    200

BSNT_03378___    201 RNVFIYFTESAKEELYLKMAHSLKKNGVLFVGSTEQIFNPEKFGLVPADT    250
                     |||||||||.||||||:|||.||||||:||||||||||:||||||...||
RBAM_020880__    201 RNVFIYFTEKAKEELYVKMAGSLKKNGILFVGSTEQIFSPEKFGLESTDT    250

BSNT_03378___    251 FFYQKR    256
                     ||||||
RBAM_020880__    251 FFYQKR    256


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