Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03378 and RBAM_020880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:35
# Commandline: needle
# -asequence dna-align/BSNT_03378___cheR.1.9828.seq
# -bsequence dna-align/RBAM_020880___cheR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03378___cheR-RBAM_020880___cheR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03378___cheR-RBAM_020880___cheR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03378___cheR
# 2: RBAM_020880___cheR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity: 585/783 (74.7%)
# Similarity: 585/783 (74.7%)
# Gaps: 24/783 ( 3.1%)
# Score: 2103.0
#
#
#=======================================
BSNT_03378___ 1 ATGGATACATACAGCGTATTTACAACGAAATGGAAACAATTAACCGGAGT 50
|||||..|.|||..|.|.||||..||.||.|||||||||.|||||||.||
RBAM_020880__ 1 ATGGAGCCTTACGACATTTTTATCACCAAGTGGAAACAAATAACCGGCGT 50
BSNT_03378___ 51 CGATTTAACACTATATAAAGAAGCACAAATGAAGAGAAGGCTAACGTCAC 100
.||||||.|..||||.|||||||||||.|||||.||..||||.|||||.|
RBAM_020880__ 51 TGATTTATCTTTATACAAAGAAGCACAGATGAAAAGGCGGCTGACGTCCC 100
BSNT_03378___ 101 TTTATGAGAAAAAGGGGTTCCAAAG-CTTTAAGGACTTTGCTGCGGCATT 149
|||||||.||.|||||||| ||.|| .|||.||||.|||||.||.||.||
RBAM_020880__ 101 TTTATGAAAAGAAGGGGTT-CAGAGATTTTCAGGAATTTGCCGCCGCTTT 149
BSNT_03378___ 150 GGAAAAGGAACAAGC-TCTCTTAAATGAAACATTGGACAGAATGACGATC 198
|||||||| |||||| |.|.||||||||||||||||||||||||||||||
RBAM_020880__ 150 GGAAAAGG-ACAAGCTTTTATTAAATGAAACATTGGACAGAATGACGATC 198
BSNT_03378___ 199 AATGTTTCAGAATTTTATCGTAATTATAAAAGATGGGAAGTTCTTGAGAC 248
||||||||.||||||||.||.|||||||||.|.||||||||||||||.||
RBAM_020880__ 199 AATGTTTCTGAATTTTACCGAAATTATAAACGGTGGGAAGTTCTTGAAAC 248
BSNT_03378___ 249 TGCAATTCTGCCGTTAATCAAG----ACCTCTAGGCCTTTAAAAATTTGG 294
..|||||||.||.|||||.||| || |..||.||||||||.|||
RBAM_020880__ 249 CTCAATTCTCCCATTAATAAAGCATAAC----AAACCGTTAAAAATATGG 294
BSNT_03378___ 295 AGTGCCGCCTGCTCAACGGGGGAGGAGCCATACACGCTTGCCATGCTTTT 344
|||||.|||||.||||||||.||||||||.||.||..|.||.|||.||.|
RBAM_020880__ 295 AGTGCGGCCTGTTCAACGGGAGAGGAGCCCTATACTTTGGCGATGATTCT 344
BSNT_03378___ 345 GGACCAGCAAAAAGGTCTTCCGGGCTATCAGATTTTAGCGACGGATATTG 394
..|.|||||.|..||.||..|.||.|.|.|.||.||.|||||.|||||||
RBAM_020880__ 345 CAATCAGCAGACGGGACTGGCCGGATTTGATATATTGGCGACAGATATTG 394
BSNT_03378___ 395 ATGAAAAAGCATTGGAAAAAGCGAAAAAAGGCGTTTATCAGGAGCGGTCT 444
|||||||.||..||...|||||.||....|||.|.||||||||.||.||.
RBAM_020880__ 395 ATGAAAAGGCGCTGAGCAAAGCCAAGCGGGGCATCTATCAGGAACGCTCG 444
BSNT_03378___ 445 TTACAGGAAGTGCC-GCTATCTGTGAAAGATCGTTATTTTACGCAAAACG 493
.|.||.||.||||| ||| ||.||||||...||||||||.||..|..|.|
RBAM_020880__ 445 CTTCAAGAGGTGCCGGCT-TCCGTGAAAAGCCGTTATTTCACTAAGCAGG 493
BSNT_03378___ 494 CAAATAGAAGTTATGAAGTGAAAAC-GGAAATCAAAAAGAATATTACATT 542
|..|.|..||||||.|||| ||||| .||.||..|.||.||.||....||
RBAM_020880__ 494 CTGACAACAGTTATCAAGT-AAAACAAGAGATTCAGAACAACATCCGGTT 542
BSNT_03378___ 543 CAAAAAGCACAATTTGCTGGCGGATCGTTATGAACAAGACTTTGACTTAA 592
.||...||||||..||||.||.||..|.||||||||.||.|||||..|.|
RBAM_020880__ 543 TAAGCGGCACAACCTGCTTGCCGACAGCTATGAACAGGATTTTGATCTGA 592
BSNT_03378___ 593 TCGTGTGCCGCAATGTATTTATTTATTTTACAGAAAGCGCGAAGGAAGAG 642
||||.||||||||.||.||||||||||||||.||||..||.||.||||||
RBAM_020880__ 593 TCGTCTGCCGCAACGTCTTTATTTATTTTACTGAAAAAGCAAAAGAAGAG 642
BSNT_03378___ 643 CTGTATTTAAAAATGGCACATAGCTTGAAGAAGAATGGAGTTCTTTTTGT 692
||||||.|.||||||||....||..||||.|||||.|||.||||.|||||
RBAM_020880__ 643 CTGTATGTGAAAATGGCGGGCAGTCTGAAAAAGAACGGAATTCTGTTTGT 692
BSNT_03378___ 693 CGGCAGCACCGAGCAAATCTTCAATCCCGAGAAGTTTGGCCTAGTCCCAG 742
||||||.||.||.|||||.||||..||.||.||.||.|||||.| ||
RBAM_020880__ 693 CGGCAGTACAGAACAAATTTTCAGCCCGGAAAAATTCGGCCTTG----AG 738
BSNT_03378___ 743 ----CCGATACATTCTTTTATCAAAAAAGATAG 771
|.||||||||.||||||||||||||||||
RBAM_020880__ 739 AGCACTGATACATTTTTTTATCAAAAAAGATAG 771
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