Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03349 and RBAM_020650

See DNA alignment / Visit BSNT_03349 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence pep-align/BSNT_03349___ypjD.1.9828.seq
#    -bsequence pep-align/RBAM_020650___ypjD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03349___ypjD-RBAM_020650___ypjD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03349___ypjD-RBAM_020650___ypjD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03349___ypjD
# 2: RBAM_020650___ypjD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 111
# Identity:     103/111 (92.8%)
# Similarity:   108/111 (97.3%)
# Gaps:           0/111 ( 0.0%)
# Score: 544.0
# 
#
#=======================================

BSNT_03349___      1 MSDKTMKDIQAEVDRYIGQFKEGYFSPLAMMARLTEELGELAREVNHRYG     50
                     ||||||||:|||||.||||||||||||||||||||||||||||||||.||
RBAM_020650__      1 MSDKTMKDLQAEVDEYIGQFKEGYFSPLAMMARLTEELGELAREVNHYYG     50

BSNT_03349___     51 EKPKKATEDDKSMEEEMGDVLFVLVCLANSLDISLEEAHDRVMHKFNTRD    100
                     |||||.||::||||||||||||||:||||||||||||||:||||||||||
RBAM_020650__     51 EKPKKTTENEKSMEEEMGDVLFVLICLANSLDISLEEAHNRVMHKFNTRD    100

BSNT_03349___    101 KDRWTRKEEGK    111
                     |||||||||||
RBAM_020650__    101 KDRWTRKEEGK    111


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.