Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03349 and RBAM_020650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_03349___ypjD.1.9828.seq
# -bsequence dna-align/RBAM_020650___ypjD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03349___ypjD-RBAM_020650___ypjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03349___ypjD-RBAM_020650___ypjD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03349___ypjD
# 2: RBAM_020650___ypjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 336
# Identity: 279/336 (83.0%)
# Similarity: 279/336 (83.0%)
# Gaps: 0/336 ( 0.0%)
# Score: 1167.0
#
#
#=======================================
BSNT_03349___ 1 GTGAGTGATAAAACAATGAAAGACATACAGGCTGAAGTAGACCGTTACAT 50
||||||||.|||||.|||||||||.||||.|||||.||.||....||.||
RBAM_020650__ 1 GTGAGTGACAAAACGATGAAAGACTTACAAGCTGAGGTCGATGAATATAT 50
BSNT_03349___ 51 CGGCCAATTTAAAGAAGGATATTTTAGCCCGCTGGCCATGATGGCGAGGC 100
|||||||||.||||||||.|||||.||||||||.|||||||||||..|.|
RBAM_020650__ 51 CGGCCAATTCAAAGAAGGCTATTTCAGCCCGCTTGCCATGATGGCCCGTC 100
BSNT_03349___ 101 TGACTGAAGAACTGGGCGAGCTCGCCAGAGAAGTGAATCACCGTTATGGA 150
|.||.|||||.||||||||.||.||.||||||||.||.||...||||||.
RBAM_020650__ 101 TCACGGAAGAGCTGGGCGAACTTGCAAGAGAAGTCAACCATTATTATGGG 150
BSNT_03349___ 151 GAAAAACCAAAAAAAGCGACTGAAGATGATAAAAGCATGGAAGAGGAAAT 200
|||||.||.||.|||.||||.|||.||||.||||||||||||||||||||
RBAM_020650__ 151 GAAAAGCCGAAGAAAACGACGGAAAATGAGAAAAGCATGGAAGAGGAAAT 200
BSNT_03349___ 201 GGGCGATGTGCTATTTGTATTGGTTTGTTTAGCCAACTCTCTTGATATCT 250
||||||||||||.||.||..||.|.||..|.||||||||.||||||||.|
RBAM_020650__ 201 GGGCGATGTGCTGTTCGTCCTGATCTGCCTCGCCAACTCCCTTGATATTT 250
BSNT_03349___ 251 CTTTAGAGGAAGCTCACGACCGAGTCATGCATAAATTTAATACAAGAGAT 300
|.||.|||||||||||..||||.|||||||||||||||||||||.|.|||
RBAM_020650__ 251 CATTGGAGGAAGCTCATAACCGCGTCATGCATAAATTTAATACACGTGAT 300
BSNT_03349___ 301 AAAGATCGCTGGACCAGAAAAGAAGAAGGAAAGTAG 336
|||||.||||||||.|||||||||||||||||||||
RBAM_020650__ 301 AAAGACCGCTGGACTAGAAAAGAAGAAGGAAAGTAG 336
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