Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03349 and RBAM_020650

See Amino acid alignment / Visit BSNT_03349 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_03349___ypjD.1.9828.seq
#    -bsequence dna-align/RBAM_020650___ypjD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03349___ypjD-RBAM_020650___ypjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03349___ypjD-RBAM_020650___ypjD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03349___ypjD
# 2: RBAM_020650___ypjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 336
# Identity:     279/336 (83.0%)
# Similarity:   279/336 (83.0%)
# Gaps:           0/336 ( 0.0%)
# Score: 1167.0
# 
#
#=======================================

BSNT_03349___      1 GTGAGTGATAAAACAATGAAAGACATACAGGCTGAAGTAGACCGTTACAT     50
                     ||||||||.|||||.|||||||||.||||.|||||.||.||....||.||
RBAM_020650__      1 GTGAGTGACAAAACGATGAAAGACTTACAAGCTGAGGTCGATGAATATAT     50

BSNT_03349___     51 CGGCCAATTTAAAGAAGGATATTTTAGCCCGCTGGCCATGATGGCGAGGC    100
                     |||||||||.||||||||.|||||.||||||||.|||||||||||..|.|
RBAM_020650__     51 CGGCCAATTCAAAGAAGGCTATTTCAGCCCGCTTGCCATGATGGCCCGTC    100

BSNT_03349___    101 TGACTGAAGAACTGGGCGAGCTCGCCAGAGAAGTGAATCACCGTTATGGA    150
                     |.||.|||||.||||||||.||.||.||||||||.||.||...||||||.
RBAM_020650__    101 TCACGGAAGAGCTGGGCGAACTTGCAAGAGAAGTCAACCATTATTATGGG    150

BSNT_03349___    151 GAAAAACCAAAAAAAGCGACTGAAGATGATAAAAGCATGGAAGAGGAAAT    200
                     |||||.||.||.|||.||||.|||.||||.||||||||||||||||||||
RBAM_020650__    151 GAAAAGCCGAAGAAAACGACGGAAAATGAGAAAAGCATGGAAGAGGAAAT    200

BSNT_03349___    201 GGGCGATGTGCTATTTGTATTGGTTTGTTTAGCCAACTCTCTTGATATCT    250
                     ||||||||||||.||.||..||.|.||..|.||||||||.||||||||.|
RBAM_020650__    201 GGGCGATGTGCTGTTCGTCCTGATCTGCCTCGCCAACTCCCTTGATATTT    250

BSNT_03349___    251 CTTTAGAGGAAGCTCACGACCGAGTCATGCATAAATTTAATACAAGAGAT    300
                     |.||.|||||||||||..||||.|||||||||||||||||||||.|.|||
RBAM_020650__    251 CATTGGAGGAAGCTCATAACCGCGTCATGCATAAATTTAATACACGTGAT    300

BSNT_03349___    301 AAAGATCGCTGGACCAGAAAAGAAGAAGGAAAGTAG    336
                     |||||.||||||||.|||||||||||||||||||||
RBAM_020650__    301 AAAGACCGCTGGACTAGAAAAGAAGAAGGAAAGTAG    336


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