Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03335 and RBAM_020530

See DNA alignment / Visit BSNT_03335 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence pep-align/BSNT_03335___ypmB.1.9828.seq
#    -bsequence pep-align/RBAM_020530___ypmB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03335___ypmB-RBAM_020530___ypmB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03335___ypmB-RBAM_020530___ypmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03335___ypmB
# 2: RBAM_020530___ypmB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 161
# Identity:     124/161 (77.0%)
# Similarity:   140/161 (87.0%)
# Gaps:           0/161 ( 0.0%)
# Score: 632.0
# 
#
#=======================================

BSNT_03335___      1 MRKKALIFTVIFGIIFLAVLLVSASIYKSAMAQKEEGHEAAAAEAKKETD     50
                     |||||||||.:||||||||||.||||:||||||||||||.|||.||::||
RBAM_020530__      1 MRKKALIFTAVFGIIFLAVLLFSASIFKSAMAQKEEGHETAAAAAKEKTD     50

BSNT_03335___     51 LANVDQVETFVGKEKYYVVKGTDKKGTALYVWVPADKKAKILSKEAKEGI    100
                     |.:.::|||||||:|||||.||||.|..:|||||||||||||||:|.:||
RBAM_020530__     51 LTDAEKVETFVGKQKYYVVTGTDKHGKYMYVWVPADKKAKILSKKASDGI    100

BSNT_03335___    101 SEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDF    150
                     |..|||||::|||||||...||.|||.||.||||||::|.||||.|||||
RBAM_020530__    101 SSGKAAKIVRDEGLVSKLNGVHPARENNVPLWEVTYINKSGQYSFSYVDF    150

BSNT_03335___    151 TTGKILKNITP    161
                     |:|||||||||
RBAM_020530__    151 TSGKILKNITP    161


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