Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03335 and RBAM_020530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_03335___ypmB.1.9828.seq
# -bsequence dna-align/RBAM_020530___ypmB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03335___ypmB-RBAM_020530___ypmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03335___ypmB-RBAM_020530___ypmB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03335___ypmB
# 2: RBAM_020530___ypmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 494
# Identity: 377/494 (76.3%)
# Similarity: 377/494 (76.3%)
# Gaps: 16/494 ( 3.2%)
# Score: 1416.0
#
#
#=======================================
BSNT_03335___ 1 ATGAGAAAAAAAGCATTAATATTTACCGTCATTTTTGGTATTATTTTTTT 50
||||||||||||||||||||||||||.|.|.|.|||||||||||||||||
RBAM_020530__ 1 ATGAGAAAAAAAGCATTAATATTTACAGCCGTATTTGGTATTATTTTTTT 50
BSNT_03335___ 51 AGCAGTACTTCTTGTCTCGGCAAGCATTTATAAATCAGCCATGGCACAAA 100
||||||.|||.|..|.|||||.|||||||.||||||.||.|||||.||||
RBAM_020530__ 51 AGCAGTTCTTTTATTTTCGGCCAGCATTTTTAAATCTGCAATGGCCCAAA 100
BSNT_03335___ 101 AGGAAGAGGGGCACGAAGCAGCAGCTGCTGAAGCTAAAAAAGAAACCGAT 150
|.|||||.||.||||||.||||.||.||.|..||||||.||.||||.|||
RBAM_020530__ 101 AAGAAGAAGGCCACGAAACAGCTGCCGCAGCCGCTAAAGAAAAAACGGAT 150
BSNT_03335___ 151 CTCGCCA-ATGTTGATCAAGTCGAAACATTTGTCGGAAAAGAAAAATATT 199
|| |.|| |||.|||..||||.||.||.||||||||.|||.|.|||||||
RBAM_020530__ 151 CT-GACAGATGCTGAGAAAGTGGAGACCTTTGTCGGCAAACAGAAATATT 199
BSNT_03335___ 200 ATGTTGTAAAGGGAACGGATAAAAAAGGCA-----CTGCGTTATATGTCT 244
|||||||.|..||||||||||||.|.||.| .|| |||||.|
RBAM_020530__ 200 ATGTTGTTACCGGAACGGATAAACATGGAAAATATATG-----TATGTAT 244
BSNT_03335___ 245 GGGTTCCTGCTGATAAAAAAGCAAAAATTCTCTCAAAAGAAGCGAAAGAG 294
||||||||||.||.||||||||||||||||||||||||.||||.|..||.
RBAM_020530__ 245 GGGTTCCTGCCGACAAAAAAGCAAAAATTCTCTCAAAAAAAGCCAGTGAC 294
BSNT_03335___ 295 GGAATCTCTGAA--GACAAAGCGGCGAAAATCATAAAGGATGAAGGGCTG 342
||.||.|| || |.|||.||.||.||.|||.|...|||.||||||||.
RBAM_020530__ 295 GGCATTTC--AAGCGGCAAGGCTGCCAAGATCGTTCGGGACGAAGGGCTT 342
BSNT_03335___ 343 GTTTCAAAGCAAAAAGAGGTTCATCTGGCAAGAGAAGGAAACGTCCTGCT 392
|||||.||||..||.|..|||||.|.|||.||||||...||.||.|.|.|
RBAM_020530__ 343 GTTTCCAAGCTGAATGGTGTTCACCCGGCGAGAGAAAACAATGTTCCGTT 392
BSNT_03335___ 393 TTGGGAAGTGACGTACTTAGACAAAGAAGGGCAATACAGTTTAAGTTATG 442
.|||||||||||.||..|..|||||...|||||.||.||.||.||.||||
RBAM_020530__ 393 ATGGGAAGTGACCTATATCAACAAAAGCGGGCAGTATAGCTTTAGCTATG 442
BSNT_03335___ 443 TGGACTTTACAACTGGAAAGATTCTCAAAAATATCACGCCTTAA 486
||||||||||||..||.||||||||||||||.|||||.||.|.|
RBAM_020530__ 443 TGGACTTTACAAGCGGCAAGATTCTCAAAAACATCACACCGTGA 486
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