Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03312 and RBAM_020390

See DNA alignment / Visit BSNT_03312 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence pep-align/BSNT_03312___ypqA.1.9828.seq
#    -bsequence pep-align/RBAM_020390___ypqA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03312___ypqA-RBAM_020390___ypqA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03312___ypqA-RBAM_020390___ypqA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03312___ypqA
# 2: RBAM_020390___ypqA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 141
# Identity:      73/141 (51.8%)
# Similarity:    99/141 (70.2%)
# Gaps:           6/141 ( 4.3%)
# Score: 372.5
# 
#
#=======================================

BSNT_03312___      1 MEFYDDKKNELQKKEEIITEAIDTLFQSSAFGNLINGFQNLINSSLKDVQ     50
                     |:...:.|.|.|:.|:||:.|:|..|.|..|..|:.|||:|:||:..:.|
RBAM_020390__      1 MDQSQNDKLEPQRNEDIISHAMDQFFHSGPFAELMQGFQHLVNSAFTEAQ     50

BSNT_03312___     51 TTILVRERDTGLYIDITIPATFRDGEIVVDVKSRYLHVTLQ--EKQKHQN     98
                     .||.|||..|||.:||::|.|||||:::|:.|..|||||::  .||.|.:
RBAM_020390__     51 VTIDVREEPTGLAVDISVPETFRDGDMLVETKGCYLHVTIRYDHKQAHSS    100

BSNT_03312___     99 EATFTSMTRTVQLPYEVRQEDMETSWNEQTMTLFFPKNKHE    139
                     ..: :||||||.|||:|.:|||||||||||:||||||.   
RBAM_020390__    101 HVS-SSMTRTVVLPYKVSEEDMETSWNEQTLTLFFPKK---    137


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