Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03312 and RBAM_020390

See Amino acid alignment / Visit BSNT_03312 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence dna-align/BSNT_03312___ypqA.1.9828.seq
#    -bsequence dna-align/RBAM_020390___ypqA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03312___ypqA-RBAM_020390___ypqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03312___ypqA-RBAM_020390___ypqA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03312___ypqA
# 2: RBAM_020390___ypqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 468
# Identity:     276/468 (59.0%)
# Similarity:   276/468 (59.0%)
# Gaps:         102/468 (21.8%)
# Score: 741.5
# 
#
#=======================================

BSNT_03312___      1 TTGGAATTCTATG-----ATGACAAAAAG---AAC--GAACTGCAAAAGA     40
                               |||     ||.||||||.|   |||  ||||.|| |||||
RBAM_020390__      1 ----------ATGGATCAATCACAAAACGATAAACTTGAACCGC-AAAGA     39

BSNT_03312___     41 AA-GAAGAAATCATAACGGAGGCAATCGA-CACTCTTTTTCAATCCTCAG     88
                     || ||.||.|||||.|...|.||.||.|| ||.| |||||||   |||||
RBAM_020390__     40 AATGAGGACATCATCAGCCATGCGATGGACCAAT-TTTTTCA---CTCAG     85

BSNT_03312___     89 ---CGTTCGGCA-ACCTTATAAACGGATTTCAGAACCTAATCAACTCGAG    134
                        |.||| ||| |..|.||..|.||.||||||.||||..||||.|||..
RBAM_020390__     86 GTCCCTTC-GCAGAATTGATGCAGGGTTTTCAGCACCTTGTCAATTCGGC    134

BSNT_03312___    135 TTTAAAGGATGTGCA---GACGACCATACTT---GTTAGAGAAAGAG-AT    177
                     |||.|..||.|.|||   |||||      ||   ||.|||| ||||| ..
RBAM_020390__    135 TTTTACTGAAGCGCAAGTGACGA------TTGACGTCAGAG-AAGAGCCG    177

BSNT_03312___    178 ACTGG----GCTGTATATCGATATTACCATTCCGGCGACGTTTCGAGATG    223
                     ||.||    ||.|    |.|||||.|.|.||||.|.|||.||.||.||.|
RBAM_020390__    178 ACGGGCCTCGCGG----TTGATATCAGCGTTCCCGAGACATTCCGTGACG    223

BSNT_03312___    224 GCGAGATCGTCGTTGATGTTAAATCGA------GGTATCTCCATGTAACA    267
                     |.||.||..|.||.|      ||.|||      |.||.||.||.||.|||
RBAM_020390__    224 GTGATATGCTGGTGG------AAACGAAGGGGTGCTACCTTCACGTTACA    267

BSNT_03312___    268 CTCCAAGAAAAACAGAAACACCAAAATGAGGCTACCTT------------    305
                     .|||...|..|.||.||||         ||||| |.||            
RBAM_020390__    268 ATCCGCTACGATCATAAAC---------AGGCT-CATTCATCCCATGTGT    307

BSNT_03312___    306 -TACAAGCATGACAAGAACGGTTCAGCTGCCTTATGAAGTTCGCCAAGAA    354
                      |.||||||||||||||||.|||...||.||.|||.|.||..|..|||||
RBAM_020390__    308 CTTCAAGCATGACAAGAACCGTTGTCCTCCCGTATAAGGTGAGTGAAGAA    357

BSNT_03312___    355 GATATGGAAACGTCTTGGAACGAGCAGACAATGACACTTTTCTTTCC--A    402
                     |||||||||||.||.|||||.||.|||||..|.||.||.|| |||||  |
RBAM_020390__    358 GATATGGAAACATCCTGGAATGAACAGACGCTTACCCTCTT-TTTCCCTA    406

BSNT_03312___    403 AAAAATAAGCATGAATGA    420
                     ||||||||          
RBAM_020390__    407 AAAAATAA----------    414


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