Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03311 and RBAM_020380
See
DNA alignment /
Visit
BSNT_03311 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:29
# Commandline: needle
# -asequence pep-align/BSNT_03311___ypqE.1.9828.seq
# -bsequence pep-align/RBAM_020380___ypqE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03311___ypqE-RBAM_020380___ypqE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03311___ypqE-RBAM_020380___ypqE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03311___ypqE
# 2: RBAM_020380___ypqE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 185
# Identity: 123/185 (66.5%)
# Similarity: 146/185 (78.9%)
# Gaps: 17/185 ( 9.2%)
# Score: 640.0
#
#
#=======================================
BSNT_03311___ 1 MVNEGITVEVNEKGENTLLKKLFGMGKTQEKVTEEVIYSPADGTVMDLSD 50
:||||||:|.:::|..||||:|||||.||||:.
RBAM_020380__ 1 -----------------MLKKLFGLGDSRKKPAEEVIFSPADGAVMDLAS 33
BSNT_03311___ 51 VPDPVFSQKMMGEGIAVEPSSGEIVSPAEGEVIQIFHTKHAVGIRTRSGI 100
||||||||||||:||||||::|:||||.||||||:|||||||||||.||.
RBAM_020380__ 34 VPDPVFSQKMMGDGIAVEPANGDIVSPVEGEVIQLFHTKHAVGIRTLSGA 83
BSNT_03311___ 101 ELLIHVGLETVNMNGEGFTAHIKEGDKVKVGDPLITCDLELIKEKASSTV 150
||||||||:|||||||||.||:|||||||.||.|:||.|:||||||||||
RBAM_020380__ 84 ELLIHVGLDTVNMNGEGFEAHVKEGDKVKTGDLLLTCRLDLIKEKASSTV 133
BSNT_03311___ 151 IPIVIMNGEAVGSMVPAGEKAARKGESKLLTIKAK 185
||:|||||:|...:..||...|:||:::|.|||.|
RBAM_020380__ 134 IPMVIMNGDAAEPLQFAGANEAKKGQTELFTIKMK 168
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.