Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03311 and RBAM_020380

See Amino acid alignment / Visit BSNT_03311 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:29
# Commandline: needle
#    -asequence dna-align/BSNT_03311___ypqE.1.9828.seq
#    -bsequence dna-align/RBAM_020380___ypqE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03311___ypqE-RBAM_020380___ypqE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03311___ypqE-RBAM_020380___ypqE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03311___ypqE
# 2: RBAM_020380___ypqE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 561
# Identity:     368/561 (65.6%)
# Similarity:   368/561 (65.6%)
# Gaps:          57/561 (10.2%)
# Score: 1274.0
# 
#
#=======================================

BSNT_03311___      1 GTGGTGAATGAAGGGATAACGGTTGAAGTGAATGAGAAGGGAGAAAATAC     50
                                                                       
RBAM_020380__      0 --------------------------------------------------      0

BSNT_03311___     51 ATTGCTGAAAAAATTATTCGGAATGGGCAAAACTCAGGAAAAGGTGACAG    100
                      |||||||||||||||||||||.||||..|.|..|.|.|||||..|.|.|
RBAM_020380__      1 -TTGCTGAAAAAATTATTCGGATTGGGAGACAGCCGGAAAAAGCCGGCCG     49

BSNT_03311___    101 AAGAGGTTATTTATTCTCCGGCAGACGGTACAGTAATGGACCTG---TCA    147
                     |.||.||.||||.|||||||||.|||||..|.||.|||||..||   |||
RBAM_020380__     50 AGGAAGTGATTTTTTCTCCGGCTGACGGAGCGGTGATGGATTTGGCTTCA     99

BSNT_03311___    148 GATGTGCCGGACCCTGTTTTTTCACAGAAAATGATGGGAGAAGGAATAGC    197
                        ||||||||.||.||.||||||||.|||||||||||.||.||.||.||
RBAM_020380__    100 ---GTGCCGGATCCCGTATTTTCACAAAAAATGATGGGGGACGGGATCGC    146

BSNT_03311___    198 GGTGGAACCTTCTAGCGGTGAAATCGTTTCTCCCGCTGAAGGTGAAGTCA    247
                     .||.||.|||.|.|.|||.||.||.|||||.||.|.|||.||.|||||.|
RBAM_020380__    147 CGTCGAGCCTGCAAACGGAGACATTGTTTCACCGGTTGAGGGAGAAGTGA    196

BSNT_03311___    248 TTCAGATTTTCCACACCAAACACGCCGTTGGCATTCGGACTCGCTCGGGA    297
                     |||||.|.|||||.||.|||||.||.||.|||||.||.||.|..||.|||
RBAM_020380__    197 TTCAGCTGTTCCATACAAAACATGCTGTCGGCATCCGCACCCTTTCCGGA    246

BSNT_03311___    298 ATTGAGCTGTTAATTCATGTCGGGCTGGAGACAGTCAATATGAACGGAGA    347
                     ...||.||.||.||.||||||||..||||.||.||||||||||||||.||
RBAM_020380__    247 GCGGAACTTTTGATACATGTCGGTTTGGATACCGTCAATATGAACGGCGA    296

BSNT_03311___    348 AGGATTTACTGCCCACATTAAAGAAGGGGATAAAGTGAAGGTCGGTGACC    397
                     |||.|||...||.||..|.||||||||.||.||||||||....||.||.|
RBAM_020380__    297 AGGCTTTGAAGCGCATGTAAAAGAAGGAGACAAAGTGAAAACAGGCGATC    346

BSNT_03311___    398 CGCTGATTACATGTGATTTGGAATTAATAAAAGAAAAAGCGAGCAGCACA    447
                     .|||..|.||.||.....||||.|||||||||||||||||.||||||||.
RBAM_020380__    347 TGCTTTTAACGTGCCGGCTGGATTTAATAAAAGAAAAAGCAAGCAGCACC    396

BSNT_03311___    448 GTCATCCCAATCGTTATAATGAATGGTGAGGCTGTAGGATCAATGGTACC    497
                     ||||||||.||.||.||.||||||||.||.||.|.||.|.|..||..|..
RBAM_020380__    397 GTCATCCCTATGGTGATTATGAATGGCGATGCCGCAGAACCTTTGCAATT    446

BSNT_03311___    498 GGCAGGCGAAAAGGCTGCTCGTAAAGGCGAATCAAAGCTCCTTACAATAA    547
                     .|||||||.|||.|..||....|||||..||.||.||||..||||.||||
RBAM_020380__    447 TGCAGGCGCAAATGAAGCGAAAAAAGGACAAACAGAGCTTTTTACGATAA    496

BSNT_03311___    548 AAGCGAAATAA    558
                     ||..|||.||.
RBAM_020380__    497 AAATGAAGTAG    507


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