Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_03303 and RBAM_020340

See DNA alignment / Visit BSNT_03303 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:28
# Commandline: needle
#    -asequence pep-align/BSNT_03303.1.9828.seq
#    -bsequence pep-align/RBAM_020340___ypsA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03303-RBAM_020340___ypsA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03303-RBAM_020340___ypsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03303
# 2: RBAM_020340___ypsA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 211
# Identity:     148/211 (70.1%)
# Similarity:   160/211 (75.8%)
# Gaps:          30/211 (14.2%)
# Score: 780.0
# 
#
#=======================================

BSNT_03303         1 MENVQLDGVNNAAQQMGPTGAPFFKAGEMMKVLAITGYKPFELGIFKQDD     50
                                                  |||||:|||||||||||||||
RBAM_020340__      1 -----------------------------MKVLAVTGYKPFELGIFKQDD     21

BSNT_03303        51 KALYYIKKAIKNRLIAFLDEGLEWILISGQLGVELWAAEVAYDLQEEYPD    100
                     :||.||||||:.||.:|:||||||||||||||.||||||.||||:||||:
RBAM_020340__     22 QALVYIKKAIETRLRSFIDEGLEWILISGQLGTELWAAETAYDLREEYPE     71

BSNT_03303       101 LKVAVITPFYEQEKNWKEPNKEQYEAVLAQADYEASLTHRPYESPLQFKQ    150
                     ||||||||||.||:.|||||||.|||||||||||.|||||||||||||:|
RBAM_020340__     72 LKVAVITPFYGQEEKWKEPNKEMYEAVLAQADYEESLTHRPYESPLQFRQ    121

BSNT_03303       151 KNQFFIDKSDGLLLLYDLEKEGSPKYMLGSAEKRREQDGYPIYFITMDDL    200
                     ||.|||:|||.||||||.|.||||||||..||||||.||||||.||||||
RBAM_020340__    122 KNAFFIEKSDALLLLYDPEMEGSPKYMLQQAEKRRETDGYPIYSITMDDL    171

BSNT_03303       201 RVTVEEDSYS-    210
                     |..|||:.:. 
RBAM_020340__    172 RAAVEEEDFFT    182


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.