Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03303 and RBAM_020340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence dna-align/BSNT_03303.1.9828.seq
# -bsequence dna-align/RBAM_020340___ypsA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03303-RBAM_020340___ypsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03303-RBAM_020340___ypsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03303
# 2: RBAM_020340___ypsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity: 412/653 (63.1%)
# Similarity: 412/653 (63.1%)
# Gaps: 124/653 (19.0%)
# Score: 1402.5
#
#
#=======================================
BSNT_03303 1 ATGGAAAACGTGCAGCTTGATGGTGTAAACAATGCAGCACAACAAATGGG 50
RBAM_020340__ 0 -------------------------------------------------- 0
BSNT_03303 51 GCCCACGGGAGCCCCATTTTTTAAAGCAGGTGAAATGATGAAAGTATTGG 100
.||||||||||.|
RBAM_020340__ 1 -------------------------------------TTGAAAGTATTAG 13
BSNT_03303 101 CAATAACGGGCTATAAACCGTTTGAACTGGGGATATTTAAGCAGGATGAC 150
|..||||.||.||.||.|||||||||||.||.||.|||||.|||||||||
RBAM_020340__ 14 CCGTAACAGGATACAAGCCGTTTGAACTCGGAATTTTTAAACAGGATGAC 63
BSNT_03303 151 AAGGCGC-TGTATTACATAAAAAAAGCCATTAAGAACCGGCTGATT---- 195
.||||.| ||| |||.||||||||.||.|| ||||.| |.||.|
RBAM_020340__ 64 CAGGCCCTTGT-TTATATAAAAAAGGCGAT--AGAAAC--CAGACTCAGA 108
BSNT_03303 196 -GCTTTTTTGGATGAAGGATTAGAATGGATTTTAATTTCGGGCCAGCTTG 244
|||||.|| ||.|||||.||.|||||||||.|.||.||.||.|||||.|
RBAM_020340__ 109 AGCTTTATT-GACGAAGGCTTGGAATGGATTCTCATATCCGGACAGCTGG 157
BSNT_03303 245 GAGTTGAGCTGTGGGCGGCAGAAGTTGCATATGATTTGCAG-GAGGAATA 293
|...||||||.||||||||||||...||.||.|||.| ||| ||.||.||
RBAM_020340__ 158 GGACTGAGCTTTGGGCGGCAGAAACGGCGTACGATCT-CAGAGAAGAGTA 206
BSNT_03303 294 CCCTGACTTAAAGGTAGCTGTCATCACACCATTTTACG---AGCAGGAAA 340
.||.||.||||||||.||.||.|||||.||.||.|||| ||.||||||
RBAM_020340__ 207 TCCGGAATTAAAGGTTGCCGTTATCACGCCTTTCTACGGCCAGGAGGAAA 256
BSNT_03303 341 AGAACTGGAAAGAACCGAATAAGGAACAGTATGAAGCAGTTCTGGCTCAG 390
|| |||||.|||||||||||.|||..|||||||||.||.||.||||||
RBAM_020340__ 257 AG---TGGAAGGAACCGAATAAAGAAATGTATGAAGCGGTGCTTGCTCAG 303
BSNT_03303 391 GCAGACTATGAAGCAAGCCTGACTCACCGTCCTTATGAAAGCCCGCTTCA 440
|||||.|||||.|..||||||||.||.||.||.||.|||||.|||||.||
RBAM_020340__ 304 GCAGATTATGAGGAGAGCCTGACGCATCGGCCGTACGAAAGTCCGCTCCA 353
BSNT_03303 441 ATTCAAACAAAAAAATCAGTTCTTCATTGATAAGTCCGACGGGCTTCTGC 490
||||...||.|||||...||||||.|||||.|||||.||.|.||||.|||
RBAM_020340__ 354 ATTCCGGCAGAAAAACGCGTTCTTTATTGAAAAGTCAGATGCGCTTTTGC 403
BSNT_03303 491 TTTTATATGA-CCTGGAAAAGGAAGGCTCCCCTAAGTATATGCTTGGGTC 539
|||||||||| ||| ||||.||||||.||.||.||.||||||| ||...|
RBAM_020340__ 404 TTTTATATGATCCT-GAAATGGAAGGATCGCCGAAATATATGC-TGCAGC 451
BSNT_03303 540 A-GCGGAAAAAAGGCGCG-AACAGGATGGCTATCCCATCTACTTTATTAC 587
| ||.||||||.|.||.| |||| ||.||.|||||.||.||.|..||.||
RBAM_020340__ 452 AGGCAGAAAAACGCCGTGAAACA-GACGGATATCCAATTTATTCGATCAC 500
BSNT_03303 588 AATGGATGACTTGAGAG-------TGACAGTAGAGGAAGACAGCTACTCA 630
.||||||||..|..|.| ||| |||.|||||...||...||
RBAM_020340__ 501 GATGGATGATCTCCGTGCCGCCGTTGA----AGAAGAAGATTTCTTTACA 546
BSNT_03303 631 TAG 633
||.
RBAM_020340__ 547 TAA 549
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