Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03301 and RBAM_020320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence pep-align/BSNT_03301___ypsC.1.9828.seq
# -bsequence pep-align/RBAM_020320___ypsC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03301___ypsC-RBAM_020320___ypsC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03301___ypsC-RBAM_020320___ypsC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03301___ypsC
# 2: RBAM_020320___ypsC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 386
# Identity: 343/386 (88.9%)
# Similarity: 365/386 (94.6%)
# Gaps: 5/386 ( 1.3%)
# Score: 1814.5
#
#
#=======================================
BSNT_03301___ 1 MKKYTLIATAPMGIEAVVAKEVRDLGYECKVDNGKVIFEGDALAICRANL 50
||||||||||||||||:|||||||||||||||||||||||||||||||||
RBAM_020320__ 1 MKKYTLIATAPMGIEAIVAKEVRDLGYECKVDNGKVIFEGDALAICRANL 50
BSNT_03301___ 51 WLRTADRIKVQVASFKAKTFDELFEKTKAINWRSFIPENGKFPVIGKSVK 100
|||||||||||||.|:||||||||||||||:||::||||.||||||||||
RBAM_020320__ 51 WLRTADRIKVQVAEFQAKTFDELFEKTKAIDWRAYIPENAKFPVIGKSVK 100
BSNT_03301___ 101 STLASVPDCQRIVKKAIVEKLKLQSGKANDWIEETGAEYKVEISLLKDQA 150
|.|||||||||||||||.|||||||||.|:||||||.|||||||||||:|
RBAM_020320__ 101 SVLASVPDCQRIVKKAIAEKLKLQSGKQNEWIEETGPEYKVEISLLKDKA 150
BSNT_03301___ 151 LITLDSSGTGLHKRGYRVDQGGAPIKETLAAALVQLTNWTPDRPFVDPFC 200
::|||||||||||||||||||||||||||||||:||||||||||||||||
RBAM_020320__ 151 VLTLDSSGTGLHKRGYRVDQGGAPIKETLAAALIQLTNWTPDRPFVDPFC 200
BSNT_03301___ 201 GSGTIAIEAALIGQNIAPGFNRDFVSEDWEWIGKDLWNKARLEVEEKANY 250
||||||||||||||||||||||||||||||||||:||:||||||||||||
RBAM_020320__ 201 GSGTIAIEAALIGQNIAPGFNRDFVSEDWEWIGKELWDKARLEVEEKANY 250
BSNT_03301___ 251 DQPLTIFASDIDHRMVQIAKENAEEAGLGDLIQFKQMQVKDFTTNLEFGV 300
||||.|||||:|||||.|||||||||||||||:.|||:|:||||.||:||
RBAM_020320__ 251 DQPLQIFASDVDHRMVNIAKENAEEAGLGDLIECKQMRVQDFTTKLEYGV 300
BSNT_03301___ 301 IVGNPPYGERLGEKKAVEQMYKEMGQAFEPLDTWSVYMLTSNENFEEAYG 350
||||||||||||||:.|||||||||:|||.|||||||||||||.|||.||
RBAM_020320__ 301 IVGNPPYGERLGEKREVEQMYKEMGRAFESLDTWSVYMLTSNEQFEEVYG 350
BSNT_03301___ 351 RKATKKRKLFNGFIKTDYYQYWSKVRPQRKKTENA- 385
||||||||||||||||||||||:| :|||.:.
RBAM_020320__ 351 RKATKKRKLFNGFIKTDYYQYWAK----KKKTISKI 382
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