Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03301 and RBAM_020320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence dna-align/BSNT_03301___ypsC.1.9828.seq
# -bsequence dna-align/RBAM_020320___ypsC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03301___ypsC-RBAM_020320___ypsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03301___ypsC-RBAM_020320___ypsC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03301___ypsC
# 2: RBAM_020320___ypsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1165
# Identity: 911/1165 (78.2%)
# Similarity: 911/1165 (78.2%)
# Gaps: 23/1165 ( 2.0%)
# Score: 3563.5
#
#
#=======================================
BSNT_03301___ 1 ATGAAGAAGTATACACTAATTGCAACGGCGCCGATGGGCATTGAAGCTGT 50
|||||||||||.||||||||.||.||||||||||||||.||.|||||..|
RBAM_020320__ 1 ATGAAGAAGTACACACTAATAGCGACGGCGCCGATGGGAATCGAAGCGAT 50
BSNT_03301___ 51 TGTCGCAAAGGAAGTACGAGATTTAGGATACGAATGCAAGGTTGATAACG 100
.|||||.||.|||||.||.||||||||.||.||||||||.||.||.||||
RBAM_020320__ 51 CGTCGCCAAAGAAGTGCGTGATTTAGGTTATGAATGCAAAGTAGACAACG 100
BSNT_03301___ 101 GGAAAGTTATTTTTGAAGGTGATGCACTTGCCATCTGCCGTGCGAACCTT 150
|.|||||.|||||||||||.|||||.|||||.||||||||.||.|||.|.
RBAM_020320__ 101 GAAAAGTCATTTTTGAAGGAGATGCGCTTGCGATCTGCCGCGCTAACTTA 150
BSNT_03301___ 151 TGGCTTAGAACAGCCGACCGCATAAAGGTTCAGGTTGCTTCTTTTAAAGC 200
|||||..|.||.||.||||||||.||.||.|||||.||....|||.|.||
RBAM_020320__ 151 TGGCTGCGGACGGCTGACCGCATTAAAGTACAGGTCGCCGAGTTTCAGGC 200
BSNT_03301___ 201 GAAAACATTTGATGAACTGTTTGAAAAAACGAAAGCGATTAACTGGCGCT 250
||||||.||||||||.||||||||||||||.|||||||||.||||||||.
RBAM_020320__ 201 GAAAACGTTTGATGAGCTGTTTGAAAAAACAAAAGCGATTGACTGGCGCG 250
BSNT_03301___ 251 CATTTATACCTGAAAACGGGAAATTCCCTGTCATCGGAAAATCGGTAAAA 300
|.|..||.||.|||||||..||.|||||.||.||||||||.||.||.|||
RBAM_020320__ 251 CGTACATTCCGGAAAACGCAAAGTTCCCCGTTATCGGAAAGTCCGTGAAA 300
BSNT_03301___ 301 TCAACACTTGCAAGCGTCCCCGACTGTCAGCGGATCGTCAAAAAAGCAAT 350
|||...|||||.||.||.||.|||||.|||||||||||||||||.||.||
RBAM_020320__ 301 TCAGTGCTTGCCAGTGTGCCTGACTGCCAGCGGATCGTCAAAAAGGCGAT 350
BSNT_03301___ 351 TGTTGAAAAGCTCAAGCTGCAGTCCGGCAAAGCCAATGATTGGATTGAAG 400
.|..||||||||.||.|||||.||.||.|||...|||||.||||||||||
RBAM_020320__ 351 AGCGGAAAAGCTGAAACTGCAATCAGGAAAACAAAATGAATGGATTGAAG 400
BSNT_03301___ 401 AAACAGGTGCCGAGTATAAAGTGGAAATTTCTTTATTGAAAGATCAGGCT 450
||||.||..||||||||||.|||||.|||||..|.||.||||||.|.||.
RBAM_020320__ 401 AAACGGGCCCCGAGTATAAGGTGGAGATTTCCCTTTTAAAAGATAAAGCC 450
BSNT_03301___ 451 CTGATTACACTGGACTCATCAGGGACGGGCCTTCACAAACGAGGATACCG 500
.||.||||||||||.||||||||.||.||||||||||||||.||||||.|
RBAM_020320__ 451 GTGCTTACACTGGATTCATCAGGAACAGGCCTTCACAAACGGGGATACAG 500
BSNT_03301___ 501 TGTCGATCAGGGCGGTGCGCCGATTAAAGAAACACTTGCTGCCGCTTTGG 550
.||.||||||||.||.||.|||||||||||.||.||.||||||||.||..
RBAM_020320__ 501 GGTTGATCAGGGAGGAGCTCCGATTAAAGAGACGCTCGCTGCCGCGTTAA 550
BSNT_03301___ 551 TGCAATTAACCAATTGGACGCCGGACCGCCCGTTTGTTGATCCTTTCTGC 600
|.||.||||||||.||||||||.|||||.|||||.||.|||||.||||||
RBAM_020320__ 551 TTCAGTTAACCAACTGGACGCCTGACCGTCCGTTCGTCGATCCGTTCTGC 600
BSNT_03301___ 601 GGCTCCGGAACAATCGCGATAGAAGCGGCGCTAATCGGCCAAAACATCGC 650
||.|||||.||.|||||.||.|||||.||..|||||||.||||||||.||
RBAM_020320__ 601 GGTTCCGGCACGATCGCCATTGAAGCCGCTTTAATCGGACAAAACATTGC 650
BSNT_03301___ 651 CCCGGGATTCAACCGCGATTTTGTATCAGAGGATTGGGAATGGATCGGTA 700
.||.||.||.|||||.||||||||.|||||.||.||||||||||||||.|
RBAM_020320__ 651 TCCCGGTTTTAACCGTGATTTTGTTTCAGAAGACTGGGAATGGATCGGAA 700
BSNT_03301___ 701 AAGATCTGTGGAACAAAGCGCGGCTTGAAGTCGAAGAAAAGGCAAATTAT 750
||||.||||||.||||.|||||.||||||||.|||||||||||.||.|||
RBAM_020320__ 701 AAGAACTGTGGGACAAGGCGCGTCTTGAAGTGGAAGAAAAGGCGAACTAT 750
BSNT_03301___ 751 GATCAGCCGCTTACA-ATTTTCGCTAGCGACATAGACCACCGCATGGTTC 799
|||||||||| |.|| ||.||.||.||.|||.||||.|||||.|||||..
RBAM_020320__ 751 GATCAGCCGC-TGCAGATCTTTGCCAGTGACGTAGATCACCGGATGGTAA 799
BSNT_03301___ 800 AAATCGCAAAAGAAAATGCAGAGGAAGCAGGATTGGGAGATTTAATCCAG 849
|.|||||.||||||||.|||||.|||||.|||.|.||.||..|.|||.|.
RBAM_020320__ 800 ACATCGCCAAAGAAAACGCAGAAGAAGCGGGACTTGGTGACCTGATCGAA 849
BSNT_03301___ 850 TTTAAGCAGATGCAGGTCAAAGACTTTACCACAAATCTGGAGTTTGGCGT 899
|..|||||.||||.|||..|.||.|||||.||.||.||.||.|..|||||
RBAM_020320__ 850 TGCAAGCAAATGCGGGTGCAGGATTTTACGACGAAGCTCGAATACGGCGT 899
BSNT_03301___ 900 AATTGTCGGCAACCCGCCATATGGAGAGCGTCTCGGCGAGAAAAAAGCCG 949
|||.|||||.|||||.||.||.||.||.||.||||||||.||||..|..|
RBAM_020320__ 900 AATCGTCGGAAACCCTCCGTACGGCGAACGGCTCGGCGAAAAAAGGGAAG 949
BSNT_03301___ 950 TTGAGCAGATGTACAAAGAAATGGGGCAGGCGTTCGAGCCGCTTGATACT 999
|.|||||||||||.|||||||||||.|.|||.||.||..|.||||||||.
RBAM_020320__ 950 TCGAGCAGATGTATAAAGAAATGGGCCGGGCATTTGAATCTCTTGATACA 999
BSNT_03301___ 1000 TGGTCTGTGTATATGCTGACATCAAATGAAAACTTTGAGGAAGCATATGG 1049
||||||||.||.|||.|.||.|||||||||.|.|||||.||.|..||.||
RBAM_020320__ 1000 TGGTCTGTCTACATGTTAACGTCAAATGAACAATTTGAAGAGGTCTACGG 1049
BSNT_03301___ 1050 CAGAAAAGCAACGAAGAAACGAAAACTCTTTAACGGGTTTATTAAAACGG 1099
.|||||||||||.||.|||||.||.|||||||||||.|||||.|||||||
RBAM_020320__ 1050 AAGAAAAGCAACCAAAAAACGGAAGCTCTTTAACGGTTTTATCAAAACGG 1099
BSNT_03301___ 1100 ATTATTATCAATACTGGTCAAAAGTAAGGCCGCAGCGTAAGAAAACA--- 1146
||||||||||.||||||.|.||| ||| ||.||||||
RBAM_020320__ 1100 ATTATTATCAGTACTGGGCTAAA--AAG----------AAAAAAACAATT 1137
BSNT_03301___ 1147 -GAAAACGCATAA-- 1158
.|||| |||.
RBAM_020320__ 1138 TCAAAA---ATATAG 1149
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