Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03276 and RBAM_020120

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:25
# Commandline: needle
#    -asequence pep-align/BSNT_03276___ypdP.1.9828.seq
#    -bsequence pep-align/RBAM_020120___ypdP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03276___ypdP-RBAM_020120___ypdP.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03276___ypdP-RBAM_020120___ypdP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03276___ypdP
# 2: RBAM_020120___ypdP
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 229
# Identity:     193/229 (84.3%)
# Similarity:   208/229 (90.8%)
# Gaps:           3/229 ( 1.3%)
# Score: 1011.0
# 
#
#=======================================

BSNT_03276___      1 MFNNSFWIFFAIIHFIIVLLFYKGFGKMGLFVWIGFATVCANLQVVKTVE     50
                     |||:..||.||:|||||||||||||||.||||||||||||||||||||||
RBAM_020120__      1 MFNDVLWILFAVIHFIIVLLFYKGFGKTGLFVWIGFATVCANLQVVKTVE     50

BSNT_03276___     51 LFGLTATLGNVMYGTIFFATDVLNEKYGPAEARKAVWLGFSTLLTLTFVM    100
                     ||||||||||:||||:|||||||||||||.||||||||||||||.||..|
RBAM_020120__     51 LFGLTATLGNIMYGTVFFATDVLNEKYGPREARKAVWLGFSTLLALTCAM    100

BSNT_03276___    101 QGVLLFEPASSDISQTALETIFGFLPRVALGSLLAFIFSQTLDVYVYSAI    150
                     ||.||::||:|||:|.|||||||||||||||||||||||||:||||||||
RBAM_020120__    101 QGALLYKPAASDIAQPALETIFGFLPRVALGSLLAFIFSQTIDVYVYSAI    150

BSNT_03276___    151 RRIFPSDRLLWLRNGGSTAVSQLFDTFIFTSVAFLGIYPAGVWLHIFIST    200
                     ||||||||||||||.||||:|||.||||||:|||:|:|.||||..|||||
RBAM_020120__    151 RRIFPSDRLLWLRNSGSTALSQLLDTFIFTAVAFIGVYSAGVWFSIFIST    200

BSNT_03276___    201 YLIKFAVSLISLPYAYAAKKMIPKDERSS    229
                     |||||||||||:|||||||:|.|..|   
RBAM_020120__    201 YLIKFAVSLISVPYAYAAKRMTPNGE---    226


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