Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03276 and RBAM_020120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:25
# Commandline: needle
# -asequence dna-align/BSNT_03276___ypdP.1.9828.seq
# -bsequence dna-align/RBAM_020120___ypdP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03276___ypdP-RBAM_020120___ypdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03276___ypdP-RBAM_020120___ypdP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03276___ypdP
# 2: RBAM_020120___ypdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 535/707 (75.7%)
# Similarity: 535/707 (75.7%)
# Gaps: 43/707 ( 6.1%)
# Score: 1982.5
#
#
#=======================================
BSNT_03276___ 1 TTGTTTAATAATTCGTTTTGGATCTTTTTTGCGATCATTCATTTTATCAT 50
||||||||..||..|||.||||||||.||||||.||||||||||||||||
RBAM_020120__ 1 TTGTTTAACGATGTGTTATGGATCTTATTTGCGGTCATTCATTTTATCAT 50
BSNT_03276___ 51 TGTTCTTTTATTTTATAAAGGATTTGGCAAAATGGGGCTGTTTGTTTGGA 100
|||||||.|.||||||||||||||||||||||.|||.||.||.||.||||
RBAM_020120__ 51 TGTTCTTCTGTTTTATAAAGGATTTGGCAAAACGGGCCTATTCGTATGGA 100
BSNT_03276___ 101 TCGGTTTTGCGACAGTCTGCGCCAACCTCCAAGTCGTCAAAACAGTGGAA 150
|||||||.||.||.||.|||||||||.|.||.||.|||||||||||.||.
RBAM_020120__ 101 TCGGTTTCGCCACGGTGTGCGCCAACTTGCAGGTTGTCAAAACAGTCGAG 150
BSNT_03276___ 151 CTGTT-TGGCTTAACAGCGACACTCGGGAATGTGATGTATGGCACAATCT 199
||||| .||||| ||.||||||||.||.|||.|.|||||.|||||..|.|
RBAM_020120__ 151 CTGTTCGGGCTT-ACGGCGACACTGGGAAATATCATGTACGGCACCGTTT 199
BSNT_03276___ 200 TTTTTGCGACAGATGTGCTGAATGAAAAATACGG-ACCAGCTGAAGCCAG 248
|.||.||.||.||||||||||||||||||||||| .|||| .|||||..|
RBAM_020120__ 200 TCTTCGCAACGGATGTGCTGAATGAAAAATACGGTCCCAG-AGAAGCGCG 248
BSNT_03276___ 249 AAAAGCGGTATGGCTCGGATTCTCAACGCTCCTGACGC--TGACATTTGT 296
.|||||.||.||||||||.||.||.||.||.|| ||| ||||||..|.
RBAM_020120__ 249 CAAAGCCGTCTGGCTCGGGTTTTCCACTCTGCT--CGCTTTGACATGCGC 296
BSNT_03276___ 297 CATGCAGGGCGTGCTGCTTTT---CGAACCGGCTTCCAGCGACATAT--- 340
|||||||| |.||| ||||| ..|||||||| |||.||.||
RBAM_020120__ 297 CATGCAGG--GAGCT-CTTTTATATAAACCGGCT----GCGTCAGATATC 339
BSNT_03276___ 341 -CACAAACAGCGCTGGAAACGATCTTCGGATTCCTTCCGCGAGTTGCGTT 389
||||..|.||.||.||.|||||.|||||.||.||.|||||.||||||.|
RBAM_020120__ 340 GCACAGCCGGCCCTTGAGACGATTTTCGGTTTTCTGCCGCGTGTTGCGCT 389
BSNT_03276___ 390 AGGAAGTCTGCTT-GCCTTTATCTTCAGCCAAACGCTGGATGTTTATGTA 438
.|||||.|| ||| ||.|||||.||||||||||||.|.||||||||||||
RBAM_020120__ 390 CGGAAGCCT-CTTGGCTTTTATTTTCAGCCAAACGATAGATGTTTATGTA 438
BSNT_03276___ 439 TATTCGGCAATTAGAAGGATATTTCCTTCTGATCGGCTTTTATGGCTCAG 488
|||||.||.|||.|.||.||.||||||||.||..|||||.|.||||||||
RBAM_020120__ 439 TATTCAGCCATTCGGAGAATCTTTCCTTCAGACAGGCTTCTCTGGCTCAG 488
BSNT_03276___ 489 AAACGGCGGCAGTACAGCAGTCAGCCAGCTGTTTGATACATTCATATTCA 538
||||.||||.||.||.||..|||||||.|||.|.||||||||.||.||||
RBAM_020120__ 489 AAACAGCGGAAGCACGGCGCTCAGCCAACTGCTGGATACATTTATCTTCA 538
BSNT_03276___ 539 CTTCAGTCGCCTTTCTCGGCATTTATCCGGCAGGCGTGTGGCTTCA-TAT 587
||.|.||.||||||.|||||.|||||.|.||.||.||.||| |||| .||
RBAM_020120__ 539 CTGCCGTGGCCTTTATCGGCGTTTATTCCGCGGGAGTATGG-TTCAGCAT 587
BSNT_03276___ 588 TTTTATTTCTACATATTTGATTAAGTTTGCGGTATCTTTGATTTCATTGC 637
.||.|||||.||.||..|||||||.|||||||||||..|.|||||..|.|
RBAM_020120__ 588 CTTCATTTCAACTTACCTGATTAAATTTGCGGTATCACTCATTTCTGTCC 637
BSNT_03276___ 638 CTTATGCTTATGCAGCCAAAAAAATGATACCTAA---AGA-TGAAAGGAG 683
|||||||.|||||.||.|||..|||||.|||.|| ||| |||
RBAM_020120__ 638 CTTATGCGTATGCGGCAAAACGAATGACACCGAATGGAGAGTGA------ 681
BSNT_03276___ 684 TTCATAA 690
RBAM_020120__ 681 ------- 681
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