Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03276 and RBAM_020120

See Amino acid alignment / Visit BSNT_03276 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:25
# Commandline: needle
#    -asequence dna-align/BSNT_03276___ypdP.1.9828.seq
#    -bsequence dna-align/RBAM_020120___ypdP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03276___ypdP-RBAM_020120___ypdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03276___ypdP-RBAM_020120___ypdP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03276___ypdP
# 2: RBAM_020120___ypdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity:     535/707 (75.7%)
# Similarity:   535/707 (75.7%)
# Gaps:          43/707 ( 6.1%)
# Score: 1982.5
# 
#
#=======================================

BSNT_03276___      1 TTGTTTAATAATTCGTTTTGGATCTTTTTTGCGATCATTCATTTTATCAT     50
                     ||||||||..||..|||.||||||||.||||||.||||||||||||||||
RBAM_020120__      1 TTGTTTAACGATGTGTTATGGATCTTATTTGCGGTCATTCATTTTATCAT     50

BSNT_03276___     51 TGTTCTTTTATTTTATAAAGGATTTGGCAAAATGGGGCTGTTTGTTTGGA    100
                     |||||||.|.||||||||||||||||||||||.|||.||.||.||.||||
RBAM_020120__     51 TGTTCTTCTGTTTTATAAAGGATTTGGCAAAACGGGCCTATTCGTATGGA    100

BSNT_03276___    101 TCGGTTTTGCGACAGTCTGCGCCAACCTCCAAGTCGTCAAAACAGTGGAA    150
                     |||||||.||.||.||.|||||||||.|.||.||.|||||||||||.||.
RBAM_020120__    101 TCGGTTTCGCCACGGTGTGCGCCAACTTGCAGGTTGTCAAAACAGTCGAG    150

BSNT_03276___    151 CTGTT-TGGCTTAACAGCGACACTCGGGAATGTGATGTATGGCACAATCT    199
                     ||||| .||||| ||.||||||||.||.|||.|.|||||.|||||..|.|
RBAM_020120__    151 CTGTTCGGGCTT-ACGGCGACACTGGGAAATATCATGTACGGCACCGTTT    199

BSNT_03276___    200 TTTTTGCGACAGATGTGCTGAATGAAAAATACGG-ACCAGCTGAAGCCAG    248
                     |.||.||.||.||||||||||||||||||||||| .|||| .|||||..|
RBAM_020120__    200 TCTTCGCAACGGATGTGCTGAATGAAAAATACGGTCCCAG-AGAAGCGCG    248

BSNT_03276___    249 AAAAGCGGTATGGCTCGGATTCTCAACGCTCCTGACGC--TGACATTTGT    296
                     .|||||.||.||||||||.||.||.||.||.||  |||  ||||||..|.
RBAM_020120__    249 CAAAGCCGTCTGGCTCGGGTTTTCCACTCTGCT--CGCTTTGACATGCGC    296

BSNT_03276___    297 CATGCAGGGCGTGCTGCTTTT---CGAACCGGCTTCCAGCGACATAT---    340
                     ||||||||  |.||| |||||   ..||||||||    |||.||.||   
RBAM_020120__    297 CATGCAGG--GAGCT-CTTTTATATAAACCGGCT----GCGTCAGATATC    339

BSNT_03276___    341 -CACAAACAGCGCTGGAAACGATCTTCGGATTCCTTCCGCGAGTTGCGTT    389
                      ||||..|.||.||.||.|||||.|||||.||.||.|||||.||||||.|
RBAM_020120__    340 GCACAGCCGGCCCTTGAGACGATTTTCGGTTTTCTGCCGCGTGTTGCGCT    389

BSNT_03276___    390 AGGAAGTCTGCTT-GCCTTTATCTTCAGCCAAACGCTGGATGTTTATGTA    438
                     .|||||.|| ||| ||.|||||.||||||||||||.|.||||||||||||
RBAM_020120__    390 CGGAAGCCT-CTTGGCTTTTATTTTCAGCCAAACGATAGATGTTTATGTA    438

BSNT_03276___    439 TATTCGGCAATTAGAAGGATATTTCCTTCTGATCGGCTTTTATGGCTCAG    488
                     |||||.||.|||.|.||.||.||||||||.||..|||||.|.||||||||
RBAM_020120__    439 TATTCAGCCATTCGGAGAATCTTTCCTTCAGACAGGCTTCTCTGGCTCAG    488

BSNT_03276___    489 AAACGGCGGCAGTACAGCAGTCAGCCAGCTGTTTGATACATTCATATTCA    538
                     ||||.||||.||.||.||..|||||||.|||.|.||||||||.||.||||
RBAM_020120__    489 AAACAGCGGAAGCACGGCGCTCAGCCAACTGCTGGATACATTTATCTTCA    538

BSNT_03276___    539 CTTCAGTCGCCTTTCTCGGCATTTATCCGGCAGGCGTGTGGCTTCA-TAT    587
                     ||.|.||.||||||.|||||.|||||.|.||.||.||.||| |||| .||
RBAM_020120__    539 CTGCCGTGGCCTTTATCGGCGTTTATTCCGCGGGAGTATGG-TTCAGCAT    587

BSNT_03276___    588 TTTTATTTCTACATATTTGATTAAGTTTGCGGTATCTTTGATTTCATTGC    637
                     .||.|||||.||.||..|||||||.|||||||||||..|.|||||..|.|
RBAM_020120__    588 CTTCATTTCAACTTACCTGATTAAATTTGCGGTATCACTCATTTCTGTCC    637

BSNT_03276___    638 CTTATGCTTATGCAGCCAAAAAAATGATACCTAA---AGA-TGAAAGGAG    683
                     |||||||.|||||.||.|||..|||||.|||.||   ||| |||      
RBAM_020120__    638 CTTATGCGTATGCGGCAAAACGAATGACACCGAATGGAGAGTGA------    681

BSNT_03276___    684 TTCATAA    690
                            
RBAM_020120__    681 -------    681


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