Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03271 and RBAM_020080

See DNA alignment / Visit BSNT_03271 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:25
# Commandline: needle
#    -asequence pep-align/BSNT_03271___degR.1.9828.seq
#    -bsequence pep-align/RBAM_020080___degR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03271___degR-RBAM_020080___degR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03271___degR-RBAM_020080___degR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03271___degR
# 2: RBAM_020080___degR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 60
# Identity:      43/60 (71.7%)
# Similarity:    50/60 (83.3%)
# Gaps:           0/60 ( 0.0%)
# Score: 216.0
# 
#
#=======================================

BSNT_03271___      1 MDDKDLKLILHKTFIEIYSDLEELADIAKKGKPSMEKYVEEIEQRCKQNI     50
                     |:|||||.||.:||.|||.||..||::||||.|||||.:||||||||||:
RBAM_020080__      1 MNDKDLKTILQQTFKEIYGDLGSLAEMAKKGMPSMEKQIEEIEQRCKQNL     50

BSNT_03271___     51 LAIEIQMKIK     60
                     :|||||..||
RBAM_020080__     51 VAIEIQTAIK     60


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.