Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03263 and RBAM_020020

See DNA alignment / Visit BSNT_03263 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:22
# Commandline: needle
#    -asequence pep-align/BSNT_03263___ypgR.1.9828.seq
#    -bsequence pep-align/RBAM_020020___ypgR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03263___ypgR-RBAM_020020___ypgR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03263___ypgR-RBAM_020020___ypgR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03263___ypgR
# 2: RBAM_020020___ypgR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 378
# Identity:     331/378 (87.6%)
# Similarity:   354/378 (93.7%)
# Gaps:           2/378 ( 0.5%)
# Score: 1704.0
# 
#
#=======================================

BSNT_03263___      1 MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPEQAEGAPPVIEEILKID     50
                     |||||||||||||||||||||||||||||||||:||:.||.|:.:||.|:
RBAM_020020__      1 MKIKSIEPTPSPNTMKVILTEELPAGKSNNYKPDQADDAPVVVRDILNIE     50

BSNT_03263___     51 GVKGVYHVADFLAVERNARYDWKDILPQVRTAFGMESAESGEENRSDQES    100
                     |||||||||||||||||||:|||:||||||:|||||..|. .|:||:|||
RBAM_020020__     51 GVKGVYHVADFLAVERNARFDWKEILPQVRSAFGMEHTEQ-SESRSEQES     99

BSNT_03263___    101 FGEVKVFVQMFSGIPMQVKLTDGEREERFGLPERFQQAILKLRSEASNVV    150
                     ||||||||||||||||||||||||||||||||||||:|||||||||||||
RBAM_020020__    100 FGEVKVFVQMFSGIPMQVKLTDGEREERFGLPERFQEAILKLRSEASNVV    149

BSNT_03263___    151 FERAWKEQGVRFGDFDEIGHDVTEELQAAYSDERLKRLTEAAAQGKGEAK    200
                     |||.|||||||||||.||||||||||||||||||||||||||||.||||:
RBAM_020020__    150 FERTWKEQGVRFGDFTEIGHDVTEELQAAYSDERLKRLTEAAAQQKGEAR    199

BSNT_03263___    201 QTVQRKAYKVTLDMLDDEDWKKRYAHLEQMDPKEEDIPVLQKALDDPKVS    250
                     ..|||||||||||||||||||:||||||||||.|:|:|||:|||.|||.|
RBAM_020020__    200 PAVQRKAYKVTLDMLDDEDWKQRYAHLEQMDPGEDDLPVLEKALHDPKTS    249

BSNT_03263___    251 IRRQAVVYLGMIETPDVLPLLYKALEDKAVSVRRTAGDCLSDIGDPQAIP    300
                     |||||||||||||.|.||||||||||||.|:|||||||||||:||..|||
RBAM_020020__    250 IRRQAVVYLGMIEKPSVLPLLYKALEDKTVTVRRTAGDCLSDLGDASAIP    299

BSNT_03263___    301 AMIKSLSDSSKLVRWRAAMFLYEVGDESAIEALRAAEDDPEFEVSLQVKM    350
                     ||:||||||||||||||||||||||||||:|||:||||||||||||||||
RBAM_020020__    300 AMMKSLSDSSKLVRWRAAMFLYEVGDESALEALKAAEDDPEFEVSLQVKM    349

BSNT_03263___    351 ALERIEHGEEAKGSVWKQMTESRKKGE-    377
                     |:|||||||||||||||||||||||.: 
RBAM_020020__    350 AIERIEHGEEAKGSVWKQMTESRKKEQL    377


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