Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03263 and RBAM_020020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:22
# Commandline: needle
# -asequence dna-align/BSNT_03263___ypgR.1.9828.seq
# -bsequence dna-align/RBAM_020020___ypgR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03263___ypgR-RBAM_020020___ypgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03263___ypgR-RBAM_020020___ypgR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03263___ypgR
# 2: RBAM_020020___ypgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1154
# Identity: 872/1154 (75.6%)
# Similarity: 872/1154 (75.6%)
# Gaps: 40/1154 ( 3.5%)
# Score: 3258.0
#
#
#=======================================
BSNT_03263___ 1 ATGAAGATAAAATCAATTGAACCTACACCAAGCCCGAATACAATGAAAGT 50
||||||||.||||||||.|||||.||.||.||.|||||.||.||||||||
RBAM_020020__ 1 ATGAAGATTAAATCAATAGAACCGACGCCGAGTCCGAACACGATGAAAGT 50
BSNT_03263___ 51 CATCTTAACGGAAGAGCTTCCGGCGGGCAAAAGCAATAACTATAAACCTG 100
.||.||.||.||||||||||||||.||.||||||||.||.||.||.||.|
RBAM_020020__ 51 GATTTTGACTGAAGAGCTTCCGGCAGGGAAAAGCAACAATTACAAGCCCG 100
BSNT_03263___ 101 AGCAAGCAGAAGGCGCACCGCCTGTTATAGAGGAAATTCTTAAA-ATAGA 149
|.||.|||||.|..||.|||..|||..||...||.||| ||||| ||.||
RBAM_020020__ 101 ATCAGGCAGATGATGCTCCGGTTGTCGTACGTGATATT-TTAAACATTGA 149
BSNT_03263___ 150 TGGAGTTAAAGGG-GTATATCACGTCGCAGATTTTCTTGCTGTTGAACGG 198
.|||| ||||||| ||.||||||||.||.|||||.||.|||||.||..|.
RBAM_020020__ 150 AGGAG-TAAAGGGCGTTTATCACGTTGCCGATTTCCTGGCTGTGGAGAGA 198
BSNT_03263___ 199 AATGCAAGATACGACTGGAAAGACATATTACCGCAAGTCCGCACTGCATT 248
||.|||.|.|..||||||||.||.||..|.||.||.|||||..|.||.||
RBAM_020020__ 199 AACGCACGTTTTGACTGGAAGGAAATTCTGCCTCAGGTCCGTTCCGCTTT 248
BSNT_03263___ 249 TGGGATGGAA----------AGTGCTGAAAGCGGAGAAGAAAATCGTTCT 288
.||.|||||| ||| ||||.||| ||||||
RBAM_020020__ 249 CGGAATGGAACATACGGAGCAGT-CTGAGAGC------------CGTTCT 285
BSNT_03263___ 289 GATCAAGAATCTTTTGGAGAGGTAAAAGTTTTTGTGCAGATGTTCAGCGG 338
||.||.|||||.||.||.||.||.||.|||||.||.||.|||||||||||
RBAM_020020__ 286 GAACAGGAATCGTTCGGTGAAGTGAAGGTTTTCGTACAAATGTTCAGCGG 335
BSNT_03263___ 339 CATTCCTATGCAAGTTAAATTAACCGATGGAGAGCGGGAAGAACGCTTCG 388
.||.||.|||||.||.|||||.||.||.||.||.||.|||||||||||||
RBAM_020020__ 336 AATCCCGATGCAGGTCAAATTGACGGACGGCGAACGTGAAGAACGCTTCG 385
BSNT_03263___ 389 GCTTACCTGAACGCTTTCAGCAGGCGATCTTAAAACTTAGATCTGAAGCT 438
||.|.||.|||||.||.||..|.||.||.|||||.||..|.||.||||||
RBAM_020020__ 386 GCCTTCCGGAACGTTTCCAAGAAGCCATTTTAAAGCTGCGTTCCGAAGCT 435
BSNT_03263___ 439 TCCAATGTTGTGTTTGAGCGGGCTTGGAAAGAACAAGGTGTCAGATTCGG 488
||.||||||||.|||||||||.||||||||||||||||.||..|.|||||
RBAM_020020__ 436 TCAAATGTTGTATTTGAGCGGACTTGGAAAGAACAAGGCGTGCGCTTCGG 485
BSNT_03263___ 489 TGACTTTGATGAAATCGGCCATGACGTGACAGAAGAGCTTCAGGCGGCAT 538
.||.|||...||||||||.||.||.||.|||||||||||||||||.||.|
RBAM_020020__ 486 GGATTTTACCGAAATCGGACACGATGTCACAGAAGAGCTTCAGGCCGCCT 535
BSNT_03263___ 539 ACAGTGATGAACGGCTGAAACGACTGACTGAAGCAGCCGCTCAAGGAAAG 588
||||||||||.|||||.|||||.|||||.|||||||||||.||...||||
RBAM_020020__ 536 ACAGTGATGAGCGGCTCAAACGTCTGACAGAAGCAGCCGCACAGCAAAAG 585
BSNT_03263___ 589 GGCGAAGCAAAACAAACTGTACAGCGCAAAGCGTATAAAGTAACGCTTGA 638
||.||.||.|.||...|.||.|||||.|||||.||||||||.||.||.||
RBAM_020020__ 586 GGTGAGGCCAGACCGGCAGTGCAGCGGAAAGCTTATAAAGTGACACTGGA 635
BSNT_03263___ 639 CATGCTGGATGATGAGGACTGGAAAAAGCGTTATGCACA-CTTGGAACAG 687
||||||.||||||||.|||||||||.||||.|||||.|| ||| ||.||.
RBAM_020020__ 636 CATGCTTGATGATGAAGACTGGAAACAGCGCTATGCCCATCTT-GAGCAA 684
BSNT_03263___ 688 ATGGATCCGAAAGAAGAGGATATCCCGGTTTTACAGAAGGCATTGGATGA 737
|||||||||...|||||.|||.|.||.||.||..|.|||||..||.||||
RBAM_020020__ 685 ATGGATCCGGGTGAAGACGATTTACCAGTATTGGAAAAGGCGCTGCATGA 734
BSNT_03263___ 738 TCCAAAGGTGTCCATCAGAAGACAGGCTGTTGTGTACTTAGGGATGATTG 787
|||.|||...||.|||||||||||.||.||.||.||.||.||.|||||.|
RBAM_020020__ 735 TCCGAAGACTTCGATCAGAAGACAAGCCGTCGTTTATTTGGGAATGATCG 784
BSNT_03263___ 788 AAACACCTGATGTTCTTCCTCTATTGTATAAAGCACTTGAGGACAAAGCT 837
|||..||...|||.|||||.||.||.||.|||||.|||||.||||||.|.
RBAM_020020__ 785 AAAAGCCGTCTGTGCTTCCGCTGTTATACAAAGCGCTTGAAGACAAAACG 834
BSNT_03263___ 838 GTATCAGTCAGAAGAACGGCCGGAGACTGCCTGTCTGATATCGGCGATCC 887
||..|.||||||||.|||||.||.|||||.|||||.|||.||||||||.|
RBAM_020020__ 835 GTGACGGTCAGAAGGACGGCGGGTGACTGTCTGTCGGATCTCGGCGATGC 884
BSNT_03263___ 888 TCAAGCCATTCCCGCTATGATCAAGTCGTTAAGCGACTCCAGCAAGCTTG 937
....|||||.||.||.|||||.||.|||.|.||.|||||.||||||||.|
RBAM_020020__ 885 GAGCGCCATCCCGGCCATGATGAAATCGCTCAGTGACTCAAGCAAGCTCG 934
BSNT_03263___ 938 TTCGCTGGCGTGCGGCCATGTTCCTGTACGAAGTCGGCGATGAAAGTGCA 987
|.||||||||.|||||||||||..|.||.|||||||||||||||||.||.
RBAM_020020__ 935 TGCGCTGGCGCGCGGCCATGTTTTTATATGAAGTCGGCGATGAAAGCGCG 984
BSNT_03263___ 988 ATTGAAGCTTT----GCGCGCTGCCGAAGATGACCCCGAATTTGAGGTCA 1033
.|.|||||.|| ||| ||.|||||.||.||.|||||.||.||||
RBAM_020020__ 985 CTGGAAGCATTAAAAGCG----GCGGAAGACGATCCGGAATTCGAAGTCA 1030
BSNT_03263___ 1034 GCCTTCAAGTCAAAATGGCGCTTGAACGTATTGAGCATGGAGAAGAAGCA 1083
||||.|||||||||||||||.|||||||.||||||||.||||||||.||.
RBAM_020020__ 1031 GCCTGCAAGTCAAAATGGCGATTGAACGGATTGAGCACGGAGAAGAGGCG 1080
BSNT_03263___ 1084 AAAGGTTCTGTTTGGAAACAAATGACGGAAAGCAGAAAAAAAGGCGA--- 1130
||||||||.||.||||||||.|||||.||||||||||||||||...|
RBAM_020020__ 1081 AAAGGTTCAGTCTGGAAACAGATGACTGAAAGCAGAAAAAAAGAACAGTT 1130
BSNT_03263___ 1131 ATAA 1134
||||
RBAM_020020__ 1131 ATAA 1134
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