Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03242 and RBAM_019890

See DNA alignment / Visit BSNT_03242 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence pep-align/BSNT_03242___ypmR.1.9828.seq
#    -bsequence pep-align/RBAM_019890___ypmR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03242___ypmR-RBAM_019890___ypmR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03242___ypmR-RBAM_019890___ypmR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03242___ypmR
# 2: RBAM_019890___ypmR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     174/255 (68.2%)
# Similarity:   215/255 (84.3%)
# Gaps:           4/255 ( 1.6%)
# Score: 922.5
# 
#
#=======================================

BSNT_03242___      1 MKLRIFSIMASLILLLTACTSIRTSSEGKQKAHETKTKEHIVIAAVGDSL     50
                     ||||:||::|.|.|||:||:..||.|:    |.|.|||:|||||||||||
RBAM_019890__      1 MKLRMFSLIAGLALLLSACSVQRTGSD----AEEPKTKDHIVIAAVGDSL     46

BSNT_03242___     51 TEGVGDPDGKGYVGKVADSIRSDKQVKTVDVKNYAVKGNRSDDLLEKLKD    100
                     |||||||||.||||:.|:|::....|||||:|||||:|:::.||||||.:
RBAM_019890__     47 TEGVGDPDGSGYVGRAAESLKKKGHVKTVDIKNYAVQGDKTSDLLEKLDN     96

BSNT_03242___    101 KKVQKGIKDADYVFFTIGGNDLMKILRQNFLQLTVEPFQEAEKPYEKRFE    150
                     |||||.:|.|||:|||||||||||:||||.:||||:|||:.|||:||||:
RBAM_019890__     97 KKVQKSLKSADYIFFTIGGNDLMKVLRQNMMQLTVQPFQKEEKPFEKRFK    146

BSNT_03242___    151 KIISEIRELNDHAELIYVSMYNPFTFTLSELNEINGVVTDWNHIAEKELK    200
                     .|:|:||:.|::|||:||||||||||||.||.||||||||||.||.|||:
RBAM_019890__    147 AIVSKIRKYNENAELVYVSMYNPFTFTLPELKEINGVVTDWNKIAAKELE    196

BSNT_03242___    201 KDKHAKIVHIEDLFNQKSDSSRISEEDDFHPNGTGYSLIAKRVYQAIKKE    250
                     ||.||..|::||||:|||.|.|||::||||||..||:|||.|:|..|:|:
RBAM_019890__    197 KDPHAAAVNVEDLFSQKSGSRRISKDDDFHPNAKGYALIADRLYGIIEKQ    246

BSNT_03242___    251 GLPKE    255
                     |||.|
RBAM_019890__    247 GLPAE    251


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