Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03242 and RBAM_019890

See Amino acid alignment / Visit BSNT_03242 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_03242___ypmR.1.9828.seq
#    -bsequence dna-align/RBAM_019890___ypmR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03242___ypmR-RBAM_019890___ypmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03242___ypmR-RBAM_019890___ypmR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03242___ypmR
# 2: RBAM_019890___ypmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 811
# Identity:     548/811 (67.6%)
# Similarity:   548/811 (67.6%)
# Gaps:          98/811 (12.1%)
# Score: 1803.0
# 
#
#=======================================

BSNT_03242___      1 TTGAAGCTGCGCATTTTTTCAATCATGGCCAGTTTGATTTTGCTTCTTA-     49
                     |||||||||||.||.||.|||.|.||.|||.|..||..||||||| ||| 
RBAM_019890__      1 TTGAAGCTGCGAATGTTCTCATTGATCGCCGGACTGGCTTTGCTT-TTAT     49

BSNT_03242___     50 CTGCGTGTAC------GAGCATACGTACATCATCTGAGG--GAAAACAAA     91
                     |.||.|||.|      |.|||...||      |||||.|  |||      
RBAM_019890__     50 CAGCTTGTTCTGTCCAGCGCACCGGT------TCTGACGCTGAA------     87

BSNT_03242___     92 AAGCCCATGAAACGAAAACAAAAGAACACATTGTCATAGCGGCTGTCGGA    141
                             |||.|||||||.|||||.||.|||||||||||.||.|||||.
RBAM_019890__     88 --------GAACCGAAAACGAAAGATCATATTGTCATAGCTGCGGTCGGT    129

BSNT_03242___    142 GATTCGCTGACAGAAGGAGTCGGAGATCCCGACGGAAAGGGATATGTCGG    191
                     |||||..||||.||||||||.||||||||.|||||....|||||.|||||
RBAM_019890__    130 GATTCATTGACTGAAGGAGTAGGAGATCCTGACGGTTCAGGATACGTCGG    179

BSNT_03242___    192 CAAGGTGGCGGATTCTATCCGGTCAGATAA----ACAAGTCAAAACGGTC    237
                     ||.||..|||||.|||.|    |.|||.||    |||.||.||||||||.
RBAM_019890__    180 CAGGGCAGCGGAGTCTCT----TAAGAAAAAGGGACATGTGAAAACGGTA    225

BSNT_03242___    238 GACGTGAAAAATTATGCCGTAAAAGGG-----AACCGTTCGGA--TGATT    280
                     ||..|.|||||||||||.|| ..||||     ||.|| |||||  ||   
RBAM_019890__    226 GATATTAAAAATTATGCGGT-GCAGGGTGACAAAACG-TCGGACCTG---    270

BSNT_03242___    281 TATTAGAAAAACTAAAAGATAAAAAGGTTCAAAAAGGCA-TAAAGGACGC    329
                       .|.|||||.||..|..|||||||.|||||.||| .|| |||||..|||
RBAM_019890__    271 --CTGGAAAAGCTTGATAATAAAAAAGTTCAGAAA-TCATTAAAGAGCGC    317

BSNT_03242___    330 AGATTATGTCTTTTTTACAATTGGCGGTAATGATTTGATGAAAATCCTTC    379
                     .||.|||.||||||||||.||.|||||||||||.||.|||||..|.||.|
RBAM_019890__    318 CGACTATATCTTTTTTACCATCGGCGGTAATGACTTAATGAAGGTGCTCC    367

BSNT_03242___    380 GCCAAAACTTTCTGCAATTAACAGTTGAACCGTTTC---AGGAAGCGGAA    426
                     ||||.||..|..||||..|.||.|||.|.|||||.|   |||||   ||.
RBAM_019890__    368 GCCAGAATATGATGCAGCTGACGGTTCAGCCGTTCCAAAAGGAA---GAG    414

BSNT_03242___    427 AAACCGTACGAAAAGCGCTTTGAAAAA----ATCATTTCTGAAATTCGCG    472
                     |||||.|..|||||.||.||    .||    |||.||||..||||.|||.
RBAM_019890__    415 AAACCTTTTGAAAAACGATT----CAAGGCGATCGTTTCAAAAATCCGCA    460

BSNT_03242___    473 AGCTGAATGATCACGCTGAGCTGATTTATGTCAGCATGTACAATCCGTTT    522
                     |....|||||..||||.||||||.|.||||||||||||||.|||||.||.
RBAM_019890__    461 AATATAATGAAAACGCAGAGCTGGTGTATGTCAGCATGTATAATCCATTC    510

BSNT_03242___    523 ACGTTTACATTATCAGAACTAAATGAAATAAATGGTGTCGTCACGGATTG    572
                     ||||||||..|..|.|||.||||.|||||.|||||.||.||.||||||||
RBAM_019890__    511 ACGTTTACGCTGCCTGAATTAAAAGAAATTAATGGGGTTGTGACGGATTG    560

BSNT_03242___    573 GAACCATATTGCTGAAAAAGAGCTGAAAAAAGATAAACA------TGCAA    616
                     ||||.|.||.||.|.||||||||||.||||||||...||      |||  
RBAM_019890__    561 GAACAAGATCGCCGCAAAAGAGCTGGAAAAAGATCCCCACGCCGCTGC--    608

BSNT_03242___    617 AAATCGTTCATATCGAAGATTTGTTCAATCAAAAAAGTGACAGCAGCCGA    666
                         .||..||.|.|||||.|||||||.|||||||||.|.||||||.||.
RBAM_019890__    609 ----GGTGAATGTTGAAGACTTGTTCAGTCAAAAAAGCGGCAGCAGACGG    654

BSNT_03242___    667 ATTTCTGAGGAAGATGATTTTCATCCTAATGGTACGGGTTATTCTCTTAT    716
                     |||||..||||.||||||||||||||.||.|..|..||.|||.|.||.||
RBAM_019890__    655 ATTTCAAAGGATGATGATTTTCATCCGAACGCAAAAGGGTATGCACTCAT    704

BSNT_03242___    717 CGCAAAGCGCGTCTATCAA-------GC--CATTAAAAAAGAAGGATTAC    757
                     |||         |.|||.|       ||  ||||.|||||.||||.||||
RBAM_019890__    705 CGC---------CGATCGATTGTACGGCATCATTGAAAAACAAGGGTTAC    745

BSNT_03242___    758 CGAAAGAGTAG    768
                     |...|||.|||
RBAM_019890__    746 CAGCAGAATAG    756


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03242 and RBAM_019890

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
