Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03230 and RBAM_019630

See DNA alignment / Visit BSNT_03230 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:20
# Commandline: needle
#    -asequence pep-align/BSNT_03230.1.9828.seq
#    -bsequence pep-align/RBAM_019630___cgeB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03230-RBAM_019630___cgeB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03230-RBAM_019630___cgeB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03230
# 2: RBAM_019630___cgeB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 318
# Identity:     161/318 (50.6%)
# Similarity:   209/318 (65.7%)
# Gaps:          33/318 (10.4%)
# Score: 901.0
# 
#
#=======================================

BSNT_03230         1 --------------------------------MSADTLEAETLVKIETFQ     18
                                                     .|....|.:|:..|..|:
RBAM_019630__      1 MNVLYIRSGYKGIYTYFDRWIEEGFLQSSVRFFSVSEFEEDTIRSIRAFK     50

BSNT_03230        19 PDFALLMVGDRVPHDWLTWLKGKGIPVYVWLTEDPFYMDISLQVIKLADA     68
                     ||.:|:|.|||:|.:||.|||.:.||||:|:||||||.|:|:.:...|||
RBAM_019630__     51 PDISLMMTGDRIPSEWLQWLKTEQIPVYLWMTEDPFYFDVSMSIAPFADA    100

BSNT_03230        69 ILTIEQNAVLYYQGLGYQHVYYVPIPVNHRLFKKMGTEQSYHSNLLIIGY    118
                     :|||||||:..|:.:|.|||||||||||.|||||...|.|.|:|||:|||
RBAM_019630__    101 VLTIEQNALDAYRQMGLQHVYYVPIPVNQRLFKKQPAEASLHTNLLLIGY    150

BSNT_03230       119 PYPNRVQLMKEAVHLPFTVRVIGKEWGKYLPKKVLKQPHIDVVSTWVPPE    168
                     ||||||:|:|.|..||:|:|:|||.|.::||||:.:|.::.|:..|:.||
RBAM_019630__    151 PYPNRVELVKAAAKLPYTLRIIGKGWRRHLPKKIARQQNVLVMDEWIAPE    200

BSNT_03230       169 QAVHYYNGADIVINAHRPYHFAFNQNTMRIKNASFNNRTFDIAACEAFQL    218
                     :|..|||.||:|:|.||.|.||.|||...|:|.|.|.|:.|||||:||||
RBAM_019630__    201 RAALYYNSADVVLNPHRSYRFALNQNGRGIENISLNTRSLDIAACQAFQL    250

BSNT_03230       219 TDLPAAHPFSSFISYHGMNDFKEKAAFYINHPEERQKAAAANYKETVPAF    268
                     |||..|.|||||:||.|:.||.:|..||:.:|.||::.||.||:|||||:
RBAM_019630__    251 TDLSPAPPFSSFVSYSGLADFADKIHFYMTNPGERKQIAALNYQETVPAY    300

BSNT_03230       269 TFDELPAKLKAIHLALS-    285
                     |:|.|||.|.||..... 
RBAM_019630__    301 TYDRLPAVLSAIRSKTFS    318


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