Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03230 and RBAM_019630

See Amino acid alignment / Visit BSNT_03230 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:20
# Commandline: needle
#    -asequence dna-align/BSNT_03230.1.9828.seq
#    -bsequence dna-align/RBAM_019630___cgeB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03230-RBAM_019630___cgeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03230-RBAM_019630___cgeB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03230
# 2: RBAM_019630___cgeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity:     600/1023 (58.7%)
# Similarity:   600/1023 (58.7%)
# Gaps:         231/1023 (22.6%)
# Score: 1619.5
# 
#
#=======================================

BSNT_03230         1 -------------ATGTC---------------TGCAGATACAC-----T     17
                                  ||.||               .|||.||||||     |
RBAM_019630__      1 ATGAACGTTTTATATATCCGTTCAGGATATAAAGGCATATACACGTATTT     50

BSNT_03230        18 TGA-----------AGCAGAA-----------------------------     27
                     |||           ||  |||                             
RBAM_019630__     51 TGACCGCTGGATCGAG--GAAGGCTTTTTACAGTCTTCCGTCCGCTTTTT     98

BSNT_03230        28 -----------ACTTTGGTGAAGAT------CG----AAACG----TTTC     52
                                |.||||..||||||      ||    |.|||    ||..
RBAM_019630__     99 TTCTGTTTCTGAGTTTGAGGAAGATACCATCCGCAGTATACGGGCATTCA    148

BSNT_03230        53 AGCCGGACTTCGCACTCT--TGATGGTTGGAGACCGCGTTCC-TCACGAC     99
                     |.||.|||.|  ||.|||  |||||...||||||||..|||| || .||.
RBAM_019630__    149 AACCAGACAT--CAGTCTGATGATGACGGGAGACCGTATTCCGTC-TGAA    195

BSNT_03230       100 TGGCTGACCTGGTTAAAG---GGTAAGGGTATCCCCGTATATGTTTGGCT    146
                     |||||....|||.|.|||   |...||   ||.|||||.|||.|.|||.|
RBAM_019630__    196 TGGCTTCAATGGCTGAAGACAGAACAG---ATTCCCGTTTATCTATGGAT    242

BSNT_03230       147 GACCGAAGACCCATTTTATATGGATATCAGCCTACAGGT-AATCAAGC--    193
                     |||.|||||.||.||||||.|.|||.|.||    ||.|| ||||  ||  
RBAM_019630__    243 GACGGAAGATCCTTTTTATTTCGATGTGAG----CATGTCAATC--GCCC    286

BSNT_03230       194 ---TCGCTGACGCCATATTAACGATTGAACAAAATGCCGTT----CTCTA    236
                        ||||.||.|||.|.||||||||.||||||||.||..||    |    
RBAM_019630__    287 CTTTCGCCGATGCCGTTTTAACGATAGAACAAAACGCGCTTGATGC----    332

BSNT_03230       237 TTATCAAGGGC---TCGGCTACCAGCACGTCTATTATGTTCCGATACCAG    283
                     |||.|   |||   |.||||..||||||||.||||||||.|||||.||.|
RBAM_019630__    333 TTACC---GGCAAATGGGCTTACAGCACGTATATTATGTCCCGATCCCCG    379

BSNT_03230       284 TTAATCATCGGCTGTTTAAAAAAATGGGCA-----CCGAACAATC-CTAT    327
                     |||||||.|||||.|||||.|||     ||     |.|||...|| || |
RBAM_019630__    380 TTAATCAGCGGCTTTTTAAGAAA-----CAACCTGCTGAAGCTTCTCT-T    423

BSNT_03230       328 CATTCAAATCTGTTAATCATCGGCTACCCTTACCCTAATCGGGTTCAGCT    377
                     ||..||||||||.|..|.|||||.|||||.|||||.||.||.|||.|.||
RBAM_019630__    424 CACACAAATCTGCTTCTGATCGGATACCCGTACCCGAACCGCGTTGAACT    473

BSNT_03230       378 TATGAAAGAAGCGGTCCATCTGCCATTCACGGTTCGGGTAATCGGCAAGG    427
                     ..||||||.|||||...|.||.||.|..|||.||||..|.|||||.||||
RBAM_019630__    474 GGTGAAAGCAGCGGCGAAGCTTCCGTATACGCTTCGTATCATCGGGAAGG    523

BSNT_03230       428 AATGGGGAAAATATCTGCCTAAAAAAGT-GCTCAAACA-GCCGCATATTG    475
                     .||||.|.|.|.||||||||||||||.| ||     || ||.|||.|.||
RBAM_019630__    524 GATGGCGCAGACATCTGCCTAAAAAAATCGC-----CAGGCAGCAAAATG    568

BSNT_03230       476 ATG-TCGTCA-GCA--CATGGGTTCCACCCGAACAGGCCGTTCAT--TAT    519
                      || ||||.| |.|  .||||.||.|||||||||..||||  |||  |||
RBAM_019630__    569 -TGCTCGTAATGGATGAATGGATTGCACCCGAACGTGCCG--CATTATAT    615

BSNT_03230       520 TATAATGGGGCAGACATCGTAATTAATGCGCATCGTCCCTATCATTTTGC    569
                     ||.||..|.||||||.|.||..|.||..|.||.|||.|.||||..|||||
RBAM_019630__    616 TACAACAGCGCAGACGTGGTCTTAAACCCTCACCGTTCTTATCGGTTTGC    665

BSNT_03230       570 TTTCAACCAAAA--TACTATGC-GCATCAAAAATGCCAGTTTTAATAACC    616
                     ..||||.||.||  .||   || |||||.|||||..||||||.||||...
RBAM_019630__    666 GCTCAATCAGAACGGAC---GCGGCATCGAAAATATCAGTTTAAATACGA    712

BSNT_03230       617 GAACGTTTGATATCGCTGCATGCGAAGCATTTCAATTAACAGA---TTTA    663
                     |||..||.||.||.||.||.||..|.||.|||||..|.|||||   ||..
RBAM_019630__    713 GAAGCTTAGACATTGCGGCTTGTCAGGCCTTTCAGCTGACAGACCTTTCT    762

BSNT_03230       664 CCCGCGGCGCATCCTTTTTCATCCTTTATTTCTTATCA-CGGCATGAACG    712
                     |||   ||||..||.||||||||||||.||||||| || ||||.|....|
RBAM_019630__    763 CCC---GCGCCCCCATTTTCATCCTTTGTTTCTTA-CAGCGGCCTTGCGG    808

BSNT_03230       713 ACTTTAAGGA-AAAAGCCGCTTTCTATAT--CAACCACCCTGAAGAACGG    759
                     |.|||..||| ||.|.|| .|||.|||||  |||  ||||.|..|||||.
RBAM_019630__    809 ATTTTGCGGATAAGATCC-ATTTTTATATGACAA--ACCCGGGTGAACGT    855

BSNT_03230       760 CAA-AAAGCTGCAGCAGC-CAATTATAAAGAGACCGTACCCGCATTTACG    807
                     .|| |||.| ||.|| || .|||||..|||||||.|||||.||.|..|||
RBAM_019630__    856 AAACAAATC-GCGGC-GCTTAATTACCAAGAGACAGTACCGGCGTACACG    903

BSNT_03230       808 TTTGA------------TGAGCTTCC----------TGCAAAACTAAAAG    835
                     |.|||            ||.||||.|          |.|||.|||     
RBAM_019630__    904 TATGACCGGCTGCCGGCTGTGCTTTCGGCTATCCGTTCCAAGACT-----    948

BSNT_03230       836 CGATTCATCTGGCGCTCTCATGA    858
                                   .||||||||
RBAM_019630__    949 --------------TTCTCATGA    957


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.