Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03230 and RBAM_019630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_03230.1.9828.seq
# -bsequence dna-align/RBAM_019630___cgeB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03230-RBAM_019630___cgeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03230-RBAM_019630___cgeB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03230
# 2: RBAM_019630___cgeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity: 600/1023 (58.7%)
# Similarity: 600/1023 (58.7%)
# Gaps: 231/1023 (22.6%)
# Score: 1619.5
#
#
#=======================================
BSNT_03230 1 -------------ATGTC---------------TGCAGATACAC-----T 17
||.|| .|||.|||||| |
RBAM_019630__ 1 ATGAACGTTTTATATATCCGTTCAGGATATAAAGGCATATACACGTATTT 50
BSNT_03230 18 TGA-----------AGCAGAA----------------------------- 27
||| || |||
RBAM_019630__ 51 TGACCGCTGGATCGAG--GAAGGCTTTTTACAGTCTTCCGTCCGCTTTTT 98
BSNT_03230 28 -----------ACTTTGGTGAAGAT------CG----AAACG----TTTC 52
|.||||..|||||| || |.||| ||..
RBAM_019630__ 99 TTCTGTTTCTGAGTTTGAGGAAGATACCATCCGCAGTATACGGGCATTCA 148
BSNT_03230 53 AGCCGGACTTCGCACTCT--TGATGGTTGGAGACCGCGTTCC-TCACGAC 99
|.||.|||.| ||.||| |||||...||||||||..|||| || .||.
RBAM_019630__ 149 AACCAGACAT--CAGTCTGATGATGACGGGAGACCGTATTCCGTC-TGAA 195
BSNT_03230 100 TGGCTGACCTGGTTAAAG---GGTAAGGGTATCCCCGTATATGTTTGGCT 146
|||||....|||.|.||| |...|| ||.|||||.|||.|.|||.|
RBAM_019630__ 196 TGGCTTCAATGGCTGAAGACAGAACAG---ATTCCCGTTTATCTATGGAT 242
BSNT_03230 147 GACCGAAGACCCATTTTATATGGATATCAGCCTACAGGT-AATCAAGC-- 193
|||.|||||.||.||||||.|.|||.|.|| ||.|| |||| ||
RBAM_019630__ 243 GACGGAAGATCCTTTTTATTTCGATGTGAG----CATGTCAATC--GCCC 286
BSNT_03230 194 ---TCGCTGACGCCATATTAACGATTGAACAAAATGCCGTT----CTCTA 236
||||.||.|||.|.||||||||.||||||||.||..|| |
RBAM_019630__ 287 CTTTCGCCGATGCCGTTTTAACGATAGAACAAAACGCGCTTGATGC---- 332
BSNT_03230 237 TTATCAAGGGC---TCGGCTACCAGCACGTCTATTATGTTCCGATACCAG 283
|||.| ||| |.||||..||||||||.||||||||.|||||.||.|
RBAM_019630__ 333 TTACC---GGCAAATGGGCTTACAGCACGTATATTATGTCCCGATCCCCG 379
BSNT_03230 284 TTAATCATCGGCTGTTTAAAAAAATGGGCA-----CCGAACAATC-CTAT 327
|||||||.|||||.|||||.||| || |.|||...|| || |
RBAM_019630__ 380 TTAATCAGCGGCTTTTTAAGAAA-----CAACCTGCTGAAGCTTCTCT-T 423
BSNT_03230 328 CATTCAAATCTGTTAATCATCGGCTACCCTTACCCTAATCGGGTTCAGCT 377
||..||||||||.|..|.|||||.|||||.|||||.||.||.|||.|.||
RBAM_019630__ 424 CACACAAATCTGCTTCTGATCGGATACCCGTACCCGAACCGCGTTGAACT 473
BSNT_03230 378 TATGAAAGAAGCGGTCCATCTGCCATTCACGGTTCGGGTAATCGGCAAGG 427
..||||||.|||||...|.||.||.|..|||.||||..|.|||||.||||
RBAM_019630__ 474 GGTGAAAGCAGCGGCGAAGCTTCCGTATACGCTTCGTATCATCGGGAAGG 523
BSNT_03230 428 AATGGGGAAAATATCTGCCTAAAAAAGT-GCTCAAACA-GCCGCATATTG 475
.||||.|.|.|.||||||||||||||.| || || ||.|||.|.||
RBAM_019630__ 524 GATGGCGCAGACATCTGCCTAAAAAAATCGC-----CAGGCAGCAAAATG 568
BSNT_03230 476 ATG-TCGTCA-GCA--CATGGGTTCCACCCGAACAGGCCGTTCAT--TAT 519
|| ||||.| |.| .||||.||.|||||||||..|||| ||| |||
RBAM_019630__ 569 -TGCTCGTAATGGATGAATGGATTGCACCCGAACGTGCCG--CATTATAT 615
BSNT_03230 520 TATAATGGGGCAGACATCGTAATTAATGCGCATCGTCCCTATCATTTTGC 569
||.||..|.||||||.|.||..|.||..|.||.|||.|.||||..|||||
RBAM_019630__ 616 TACAACAGCGCAGACGTGGTCTTAAACCCTCACCGTTCTTATCGGTTTGC 665
BSNT_03230 570 TTTCAACCAAAA--TACTATGC-GCATCAAAAATGCCAGTTTTAATAACC 616
..||||.||.|| .|| || |||||.|||||..||||||.||||...
RBAM_019630__ 666 GCTCAATCAGAACGGAC---GCGGCATCGAAAATATCAGTTTAAATACGA 712
BSNT_03230 617 GAACGTTTGATATCGCTGCATGCGAAGCATTTCAATTAACAGA---TTTA 663
|||..||.||.||.||.||.||..|.||.|||||..|.||||| ||..
RBAM_019630__ 713 GAAGCTTAGACATTGCGGCTTGTCAGGCCTTTCAGCTGACAGACCTTTCT 762
BSNT_03230 664 CCCGCGGCGCATCCTTTTTCATCCTTTATTTCTTATCA-CGGCATGAACG 712
||| ||||..||.||||||||||||.||||||| || ||||.|....|
RBAM_019630__ 763 CCC---GCGCCCCCATTTTCATCCTTTGTTTCTTA-CAGCGGCCTTGCGG 808
BSNT_03230 713 ACTTTAAGGA-AAAAGCCGCTTTCTATAT--CAACCACCCTGAAGAACGG 759
|.|||..||| ||.|.|| .|||.||||| ||| ||||.|..|||||.
RBAM_019630__ 809 ATTTTGCGGATAAGATCC-ATTTTTATATGACAA--ACCCGGGTGAACGT 855
BSNT_03230 760 CAA-AAAGCTGCAGCAGC-CAATTATAAAGAGACCGTACCCGCATTTACG 807
.|| |||.| ||.|| || .|||||..|||||||.|||||.||.|..|||
RBAM_019630__ 856 AAACAAATC-GCGGC-GCTTAATTACCAAGAGACAGTACCGGCGTACACG 903
BSNT_03230 808 TTTGA------------TGAGCTTCC----------TGCAAAACTAAAAG 835
|.||| ||.||||.| |.|||.|||
RBAM_019630__ 904 TATGACCGGCTGCCGGCTGTGCTTTCGGCTATCCGTTCCAAGACT----- 948
BSNT_03230 836 CGATTCATCTGGCGCTCTCATGA 858
.||||||||
RBAM_019630__ 949 --------------TTCTCATGA 957
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