Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03217 and RBAM_019530

See DNA alignment / Visit BSNT_03217 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:17
# Commandline: needle
#    -asequence pep-align/BSNT_03217___yodP.1.9828.seq
#    -bsequence pep-align/RBAM_019530___yodP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03217___yodP-RBAM_019530___yodP.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03217___yodP-RBAM_019530___yodP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03217___yodP
# 2: RBAM_019530___yodP
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     156/288 (54.2%)
# Similarity:   205/288 (71.2%)
# Gaps:          13/288 ( 4.5%)
# Score: 842.0
# 
#
#=======================================

BSNT_03217___      1 ---MLKSIKSSGVTAVLDHDGFNKRIRVVRYDGAIEKVLPDIVAAAKEEN     47
                        ::|.:::....|.:|.|.||:|:||:||||.|..::|.::|.||:|.
RBAM_019530__      1 MTELIKELRAEKGAAEIDADRFNERLRVIRYDGQITALIPAVLAEAKQEG     50

BSNT_03217___     48 AEKIIVYAKQHDEPMLAKQLFAPEGYLKGYYLGHSACVMVRYLSESRRQT     97
                     |:|:|.:||:.|||...|.||..||.:.|||.||.|.||||||||.||::
RBAM_019530__     51 AQKVIFFAKRGDEPEFVKHLFIVEGVIDGYYNGHEAVVMVRYLSEERRRS    100

BSNT_03217___     98 DSYTEEQEIIEAIYRTAPRLRNDSKPVFTMRKAETNDMYQLSMLYKKVFR    147
                     |||..|...::.:|.|..|....::.....|||:.:|..:|:.|||.||.
RBAM_019530__    101 DSYVSEDSTVDRLYETPRRGLTQTENTLMFRKADEDDADRLTHLYKHVFL    150

BSNT_03217___    148 TYPTPVFDPAYIEKTMNANTVYYIMFDHDRLISAASAEINPELGHAEITD    197
                     |||||||:|.||:|||..||:||..||.|.||.||||:|||.|||||:||
RBAM_019530__    151 TYPTPVFNPLYIKKTMRENTIYYAAFDQDLLIGAASADINPVLGHAEMTD    200

BSNT_03217___    198 CAVLPEYRGHSLTSFLIEALEKEMAGKDIFHVFSLARASSFGMNAVLYHS    247
                     ||||.:|||:|:|:.|.:|||:|:||:.|.|:||||||:|:||||||||:
RBAM_019530__    201 CAVLSDYRGNSVTAHLFKALEQELAGRGIIHLFSLARAASYGMNAVLYHA    250

BSNT_03217___    248 GYQYGGRLINNCFIAEGLENMNIWCKQL----------    275
                     ||.|.|||:|||.|:|||||||||||.|          
RBAM_019530__    251 GYGYRGRLVNNCRISEGLENMNIWCKTLRLAIHKEEFV    288


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.