Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03217 and RBAM_019530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:17
# Commandline: needle
# -asequence dna-align/BSNT_03217___yodP.1.9828.seq
# -bsequence dna-align/RBAM_019530___yodP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03217___yodP-RBAM_019530___yodP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03217___yodP-RBAM_019530___yodP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03217___yodP
# 2: RBAM_019530___yodP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 955
# Identity: 559/955 (58.5%)
# Similarity: 559/955 (58.5%)
# Gaps: 215/955 (22.5%)
# Score: 1518.5
#
#
#=======================================
BSNT_03217___ 1 ---------ATGCTCAAGTCAAT---------AAAGAGTAGCGGTGTCAC 32
.||.|.|||..|.| |||| |.||||| |
RBAM_019530__ 1 GTGACGGAGCTGATAAAGGAACTGAGGGCTGAAAAG-GGAGCGG-----C 44
BSNT_03217___ 33 AGCAGTTT--TGGACCATGACGGTTTTAATAAACGAATCAGAGTGGTCCG 80
.| ||.|| ||.| |||.||||.|||.|.||..|||||||..|.||
RBAM_019530__ 45 CG-AGATTGATGCA----GACCGTTTCAATGAGCGGCTCAGAGTCATTCG 89
BSNT_03217___ 81 TTATGACGGAGCCATTGA----GAAGGTTCTGCCGGATATCGTGGCAGCG 126
|||||||||| || || |..|.||.|.||||...|..||||||..
RBAM_019530__ 90 TTATGACGGA--CA--GATCACGGCGCTTATTCCGGCCGTTTTGGCAGAA 135
BSNT_03217___ 127 GCAA---AAGAAGAGAATGCAGAAAAAATCATCGTCTATGCGAA--GCAG 171
|||| |||||| || ||..||||..|.||..|||.|||.|| ||.|
RBAM_019530__ 136 GCAAAGCAAGAAG-GA--GCCCAAAAGGTAATTTTCTTTGCCAAGCGCGG 182
BSNT_03217___ 172 CATGATGAGCC--AATGCTTGCCAAACA-------ATTATTTGCGCCGGA 212
| |||||||| ||| |||.|||.|| |||.|| ||
RBAM_019530__ 183 C--GATGAGCCGGAAT--TTGTCAAGCATCTTTTTATTGTT-------GA 221
BSNT_03217___ 213 GGGCTATC-TAAAGGGCTATTATCTCGGCCATTCGGCTTGTGTCATGGTA 261
||| |.|| ||.|.||.|||||...|||.|||..||||..|||.|||||.
RBAM_019530__ 222 GGG-TGTCATAGACGGGTATTACAACGGGCATGAGGCTGTTGTGATGGTG 270
BSNT_03217___ 262 CGTTATCTGTCAGA--AAGCCGAAGACAAACAGATTCTTATACAGAGGAA 309
||.|||.|.||||| || ||.||||...|||||||.||| |.|.
RBAM_019530__ 271 CGCTATTTATCAGAGGAA--CGGAGACGGTCAGATTCATAT-----GTAT 313
BSNT_03217___ 310 CAGGAGATCATCGA------AGCC--ATATATCG---CACAGCGCC---- 344
|||.|||| |||| | || .||||| | |||.|||.|
RBAM_019530__ 314 CAGAAGAT--TCGACTGTTGA-CCGTTTATAT-GAGACACCGCGGCGGGG 359
BSNT_03217___ 345 -CCGTCTTCGCAACGACAGTAAACCCGTTTTTACGATG---AGAAAAGCA 390
|.|.|| || |||||.||||.||.| |||| ||||||||.
RBAM_019530__ 360 ACTGACT---CA--GACAGAAAACACGCT-----GATGTTCAGAAAAGCG 399
BSNT_03217___ 391 GAAACAAACGACATGTACCAGCTATCGATGC-----------------TG 423
| |||| ||.| ||||| |.
RBAM_019530__ 400 G------ACGA--------AGAT---GATGCAGACCGTTTAACGCACTTA 432
BSNT_03217___ 424 TATAAAAAAGTATTTCGCACGTACCCAACCCCAGTATTTGACCCCGCTTA 473
||||||.|.||.||||..||.||.||.||.||.||.|||.|.|||..|||
RBAM_019530__ 433 TATAAACATGTTTTTCTTACCTATCCGACTCCTGTCTTTAATCCCCTTTA 482
BSNT_03217___ 474 TATTGAAAAGACGATGAATGCAAATACGGTGTATTATATCATGTTTGATC 523
||||.||||.||.||||..|.|||.||..|.||||||..|...||.||||
RBAM_019530__ 483 TATTAAAAAAACAATGAGAGAAAACACCATCTATTATGCCGCATTCGATC 532
BSNT_03217___ 524 ATGACCGCCTGATCAGCGCAGCAAGCGCAGAAATCAATCCAGAGCTTGGG 573
|.||.|..||.||..|.||.|||||||||||.||||||||.|...|.|||
RBAM_019530__ 533 AGGATCTTCTCATTGGGGCGGCAAGCGCAGATATCAATCCGGTATTGGGG 582
BSNT_03217___ 574 CATGCAGAAATAACCGATTGCGCTGTGCTGCCGGAATATCGCGGCCATTC 623
||.||.|||||.|||||||||||.||.|||.|.||.||..|.||..|.||
RBAM_019530__ 583 CACGCTGAAATGACCGATTGCGCGGTTCTGTCAGATTACAGGGGGAACTC 632
BSNT_03217___ 624 GTTAA---CAAGCTT-TTTAATCGAGGCGTTAGAAAAAGAAAT----GGC 665
..||| ||..||| |||| |.|||||.||..|.|||.| |||
RBAM_019530__ 633 CGTAACGGCACACTTGTTTA----AAGCGTTGGAGCAGGAACTCGCGGGC 678
BSNT_03217___ 666 TGGAAAGGATATCTTTCATGTGTTTTCTCTCGCCCGTGCTTCGTCTTTTG 715
.|| ||| |||.|.|||.|.|||||..|.||||||||..||||||..|
RBAM_019530__ 679 CGG---GGA-ATCATCCATCTTTTTTCCTTGGCCCGTGCAGCGTCTTACG 724
BSNT_03217___ 716 GGATGAATGCTGTGTTGTACCATTCAGGTTATCAATATGGC------GGA 759
||||||||||.||.|||||.|||.|.|| |||.||| ||.
RBAM_019530__ 725 GGATGAATGCCGTTTTGTATCATGCCGG------ATACGGCTACAGAGGC 768
BSNT_03217___ 760 AGGCTGATCAATAATTGC----TTTATAGCCGAAGGCCTTGAAAACATGA 805
|||||..|.||.||.||| ||| |.|||||.||.|||||.||||
RBAM_019530__ 769 AGGCTTGTGAACAACTGCCGCATTT----CAGAAGGGCTCGAAAATATGA 814
BSNT_03217___ 806 ATATTTGGTGCAAGCAACTGTAA--------------------------- 828
||||.||||||||| |||.||.
RBAM_019530__ 815 ATATATGGTGCAAG--ACTTTACGTTTGGCCATTCATAAGGAGGAATTCG 862
BSNT_03217___ 828 ----- 828
RBAM_019530__ 863 TTTGA 867
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