Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03217 and RBAM_019530

See Amino acid alignment / Visit BSNT_03217 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:17
# Commandline: needle
#    -asequence dna-align/BSNT_03217___yodP.1.9828.seq
#    -bsequence dna-align/RBAM_019530___yodP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03217___yodP-RBAM_019530___yodP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03217___yodP-RBAM_019530___yodP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03217___yodP
# 2: RBAM_019530___yodP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 955
# Identity:     559/955 (58.5%)
# Similarity:   559/955 (58.5%)
# Gaps:         215/955 (22.5%)
# Score: 1518.5
# 
#
#=======================================

BSNT_03217___      1 ---------ATGCTCAAGTCAAT---------AAAGAGTAGCGGTGTCAC     32
                              .||.|.|||..|.|         |||| |.|||||     |
RBAM_019530__      1 GTGACGGAGCTGATAAAGGAACTGAGGGCTGAAAAG-GGAGCGG-----C     44

BSNT_03217___     33 AGCAGTTT--TGGACCATGACGGTTTTAATAAACGAATCAGAGTGGTCCG     80
                     .| ||.||  ||.|    |||.||||.|||.|.||..|||||||..|.||
RBAM_019530__     45 CG-AGATTGATGCA----GACCGTTTCAATGAGCGGCTCAGAGTCATTCG     89

BSNT_03217___     81 TTATGACGGAGCCATTGA----GAAGGTTCTGCCGGATATCGTGGCAGCG    126
                     ||||||||||  ||  ||    |..|.||.|.||||...|..||||||..
RBAM_019530__     90 TTATGACGGA--CA--GATCACGGCGCTTATTCCGGCCGTTTTGGCAGAA    135

BSNT_03217___    127 GCAA---AAGAAGAGAATGCAGAAAAAATCATCGTCTATGCGAA--GCAG    171
                     ||||   |||||| ||  ||..||||..|.||..|||.|||.||  ||.|
RBAM_019530__    136 GCAAAGCAAGAAG-GA--GCCCAAAAGGTAATTTTCTTTGCCAAGCGCGG    182

BSNT_03217___    172 CATGATGAGCC--AATGCTTGCCAAACA-------ATTATTTGCGCCGGA    212
                     |  ||||||||  |||  |||.|||.||       |||.||       ||
RBAM_019530__    183 C--GATGAGCCGGAAT--TTGTCAAGCATCTTTTTATTGTT-------GA    221

BSNT_03217___    213 GGGCTATC-TAAAGGGCTATTATCTCGGCCATTCGGCTTGTGTCATGGTA    261
                     ||| |.|| ||.|.||.|||||...|||.|||..||||..|||.|||||.
RBAM_019530__    222 GGG-TGTCATAGACGGGTATTACAACGGGCATGAGGCTGTTGTGATGGTG    270

BSNT_03217___    262 CGTTATCTGTCAGA--AAGCCGAAGACAAACAGATTCTTATACAGAGGAA    309
                     ||.|||.|.|||||  ||  ||.||||...|||||||.|||     |.|.
RBAM_019530__    271 CGCTATTTATCAGAGGAA--CGGAGACGGTCAGATTCATAT-----GTAT    313

BSNT_03217___    310 CAGGAGATCATCGA------AGCC--ATATATCG---CACAGCGCC----    344
                     |||.||||  ||||      | ||  .||||| |   |||.|||.|    
RBAM_019530__    314 CAGAAGAT--TCGACTGTTGA-CCGTTTATAT-GAGACACCGCGGCGGGG    359

BSNT_03217___    345 -CCGTCTTCGCAACGACAGTAAACCCGTTTTTACGATG---AGAAAAGCA    390
                      |.|.||   ||  |||||.||||.||.|     ||||   ||||||||.
RBAM_019530__    360 ACTGACT---CA--GACAGAAAACACGCT-----GATGTTCAGAAAAGCG    399

BSNT_03217___    391 GAAACAAACGACATGTACCAGCTATCGATGC-----------------TG    423
                     |      ||||        ||.|   |||||                 |.
RBAM_019530__    400 G------ACGA--------AGAT---GATGCAGACCGTTTAACGCACTTA    432

BSNT_03217___    424 TATAAAAAAGTATTTCGCACGTACCCAACCCCAGTATTTGACCCCGCTTA    473
                     ||||||.|.||.||||..||.||.||.||.||.||.|||.|.|||..|||
RBAM_019530__    433 TATAAACATGTTTTTCTTACCTATCCGACTCCTGTCTTTAATCCCCTTTA    482

BSNT_03217___    474 TATTGAAAAGACGATGAATGCAAATACGGTGTATTATATCATGTTTGATC    523
                     ||||.||||.||.||||..|.|||.||..|.||||||..|...||.||||
RBAM_019530__    483 TATTAAAAAAACAATGAGAGAAAACACCATCTATTATGCCGCATTCGATC    532

BSNT_03217___    524 ATGACCGCCTGATCAGCGCAGCAAGCGCAGAAATCAATCCAGAGCTTGGG    573
                     |.||.|..||.||..|.||.|||||||||||.||||||||.|...|.|||
RBAM_019530__    533 AGGATCTTCTCATTGGGGCGGCAAGCGCAGATATCAATCCGGTATTGGGG    582

BSNT_03217___    574 CATGCAGAAATAACCGATTGCGCTGTGCTGCCGGAATATCGCGGCCATTC    623
                     ||.||.|||||.|||||||||||.||.|||.|.||.||..|.||..|.||
RBAM_019530__    583 CACGCTGAAATGACCGATTGCGCGGTTCTGTCAGATTACAGGGGGAACTC    632

BSNT_03217___    624 GTTAA---CAAGCTT-TTTAATCGAGGCGTTAGAAAAAGAAAT----GGC    665
                     ..|||   ||..||| ||||    |.|||||.||..|.|||.|    |||
RBAM_019530__    633 CGTAACGGCACACTTGTTTA----AAGCGTTGGAGCAGGAACTCGCGGGC    678

BSNT_03217___    666 TGGAAAGGATATCTTTCATGTGTTTTCTCTCGCCCGTGCTTCGTCTTTTG    715
                     .||   ||| |||.|.|||.|.|||||..|.||||||||..||||||..|
RBAM_019530__    679 CGG---GGA-ATCATCCATCTTTTTTCCTTGGCCCGTGCAGCGTCTTACG    724

BSNT_03217___    716 GGATGAATGCTGTGTTGTACCATTCAGGTTATCAATATGGC------GGA    759
                     ||||||||||.||.|||||.|||.|.||      |||.|||      ||.
RBAM_019530__    725 GGATGAATGCCGTTTTGTATCATGCCGG------ATACGGCTACAGAGGC    768

BSNT_03217___    760 AGGCTGATCAATAATTGC----TTTATAGCCGAAGGCCTTGAAAACATGA    805
                     |||||..|.||.||.|||    |||    |.|||||.||.|||||.||||
RBAM_019530__    769 AGGCTTGTGAACAACTGCCGCATTT----CAGAAGGGCTCGAAAATATGA    814

BSNT_03217___    806 ATATTTGGTGCAAGCAACTGTAA---------------------------    828
                     ||||.|||||||||  |||.||.                           
RBAM_019530__    815 ATATATGGTGCAAG--ACTTTACGTTTGGCCATTCATAAGGAGGAATTCG    862

BSNT_03217___    828 -----    828
                          
RBAM_019530__    863 TTTGA    867


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