Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03198 and RBAM_019410

See DNA alignment / Visit BSNT_03198 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:11
# Commandline: needle
#    -asequence pep-align/BSNT_03198___yodJ.1.9828.seq
#    -bsequence pep-align/RBAM_019410___yodJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03198___yodJ-RBAM_019410___yodJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03198___yodJ-RBAM_019410___yodJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03198___yodJ
# 2: RBAM_019410___yodJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 273
# Identity:     214/273 (78.4%)
# Similarity:   243/273 (89.0%)
# Gaps:           1/273 ( 0.4%)
# Score: 1131.0
# 
#
#=======================================

BSNT_03198___      1 MKKSGKWFSLAAALSVTAIVGAGCSMSNGDAQKDTKTTAETKQTEQKTAD     50
                     ||||.||||||||||||||||.|||:|.||:.|||||.|||||::. |:.
RBAM_019410__      1 MKKSTKWFSLAAALSVTAIVGTGCSISGGDSHKDTKTAAETKQSDD-TSS     49

BSNT_03198___     51 SKKSNTQNSEFSLESQYFNDIKKVDGLETIQNPENILALVNKQYALPGNY    100
                     .|.:..:||:|.|||:||||||:|:||||||||.|.||||||.|.|||:|
RBAM_019410__     50 KKTTKAENSDFVLESKYFNDIKEVNGLETIQNPTNTLALVNKTYTLPGDY     99

BSNT_03198___    101 EPSDLVIPDVEFSFEEKIQKRYIRKEAADALKTMFDAAKKEGYELAAVSG    150
                     :|:|||||.|||||.|||:||||||.|||||..:|.|.|||||:|.||||
RBAM_019410__    100 KPNDLVIPKVEFSFTEKIEKRYIRKPAADALAELFSAGKKEGYDLVAVSG    149

BSNT_03198___    151 YRSYDRQKVIFDNEVSLKGEKKAKEAVAYPGESEHQTGLAMDISSRSNGF    200
                     |||||||||||||||||||||||||||||||:|||||||||||||:|||:
RBAM_019410__    150 YRSYDRQKVIFDNEVSLKGEKKAKEAVAYPGQSEHQTGLAMDISSKSNGY    199

BSNT_03198___    201 ELNEAFGSTADGKWVQDNAYKYGFIIRYPKNKEDITKYEYEPWHLRYVGK    250
                     |||||||:|||||||:|:||:|||||||||.||::|||||||||||||||
RBAM_019410__    200 ELNEAFGNTADGKWVKDHAYEYGFIIRYPKGKENVTKYEYEPWHLRYVGK    249

BSNT_03198___    251 KAAKVIQDNDLTLEEYFEKVKKI    273
                     ||||.|.|:.|||||||.:|||:
RBAM_019410__    250 KAAKAIHDHQLTLEEYFNEVKKV    272


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.