Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03198 and RBAM_019410

See Amino acid alignment / Visit BSNT_03198 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:12
# Commandline: needle
#    -asequence dna-align/BSNT_03198___yodJ.1.9828.seq
#    -bsequence dna-align/RBAM_019410___yodJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03198___yodJ-RBAM_019410___yodJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03198___yodJ-RBAM_019410___yodJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03198___yodJ
# 2: RBAM_019410___yodJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     633/837 (75.6%)
# Similarity:   633/837 (75.6%)
# Gaps:          33/837 ( 3.9%)
# Score: 2331.5
# 
#
#=======================================

BSNT_03198___      1 ATGAAAAAGTCCGGTAAATGGTTCTCACTGGCTGCCGCTCTGAGTGTAAC     50
                     |||||.||.|||..||||||||||||.||.|||||||||||.||.|||||
RBAM_019410__      1 ATGAAGAAATCCACTAAATGGTTCTCGCTCGCTGCCGCTCTCAGCGTAAC     50

BSNT_03198___     51 GGCAATAGTCGGAGCCGGCTGCAGCATGTCGAACGGAGA-TGCTCAAAAG     99
                     .|||||.||.|||.|||||||||||||.||...|||.|| .|| ||.|||
RBAM_019410__     51 CGCAATCGTGGGAACCGGCTGCAGCATTTCAGGCGGCGACAGC-CACAAG     99

BSNT_03198___    100 GATACGAAAACCACAGCAGAAACAAAGCAAACAGAACAAAAAACAGCTGA    149
                     ||.||.|||||..||||.||||||||.|||.||||..|.|.|.||     
RBAM_019410__    100 GACACAAAAACAGCAGCTGAAACAAAACAATCAGATGACACATCA-----    144

BSNT_03198___    150 CAGCAAAAAATCA---AACACTCAAAACAGTGAGTTTTCATTGGAAAGCC    196
                      |||||||||.||   ||..|..|||||||.||.|||..||||||.|||.
RBAM_019410__    145 -AGCAAAAAAACAACGAAGGCAGAAAACAGCGATTTTGTATTGGAGAGCA    193

BSNT_03198___    197 AGTATTTCAATGATATTAAAAAAGTCGATGGTCTGGAAACCATTCAAAAT    246
                     |.|||||.||||||||||||.||||..|.||.||.||.||||||||||| 
RBAM_019410__    194 AATATTTTAATGATATTAAAGAAGTGAACGGGCTTGAGACCATTCAAAA-    242

BSNT_03198___    247 CCAGA-AAATATACTCGCGCTTGTCAATAA-ACAATATGCACTGCCCGGA    294
                     ||.|| |||||.|||.|||||.||.||||| || |||..|.|||||.|||
RBAM_019410__    243 CCCGACAAATACACTTGCGCTCGTGAATAAGAC-ATACACGCTGCCGGGA    291

BSNT_03198___    295 AACTATGAACCTAGCGATCTTGTCATACCTGATGTAGAGTTTTCTTTTGA    344
                     .|.|||.||||.|..|||||.||.||.||..|.||.||.||||||||| |
RBAM_019410__    292 GATTATAAACCGAATGATCTCGTGATCCCGAAAGTCGAATTTTCTTTT-A    340

BSNT_03198___    345 ---AGAAAAGATTC-AAAAACGTTACATCAGAAAAGAAGCGGCCGACGCA    390
                        ||||||   || |.|||||.||.|||.|.|||...||.|||||.||.
RBAM_019410__    341 CTGAGAAAA---TCGAGAAACGATATATCCGCAAACCTGCCGCCGATGCT    387

BSNT_03198___    391 TT-----AAAAACAATGTTCGATGCTGCCAAAAAGGAAGGCTATGAACTG    435
                     ||     |     |.|.|||...||.|..|||||.|||||.|||||.|||
RBAM_019410__    388 TTGGCGGA-----ACTATTCAGCGCCGGGAAAAAAGAAGGTTATGACCTG    432

BSNT_03198___    436 GCAGCTGTCTCAGGGTACCGTTCGTATGACAGACAGAAAGTCATTTTTGA    485
                     |..||.||.|||||.|||||.||.|||||||||||||||||.|||||.||
RBAM_019410__    433 GTTGCCGTTTCAGGATACCGCTCTTATGACAGACAGAAAGTTATTTTCGA    482

BSNT_03198___    486 CAATGAAGTAAGCCTAAAAGGGGAAAAGAAGGCAAAGGAAGCGGTCGCTT    535
                     .||||||||.||.||.|||||.|||||.|||||.||.|||||.|||||.|
RBAM_019410__    483 TAATGAAGTCAGTCTGAAAGGTGAAAAAAAGGCGAAAGAAGCCGTCGCAT    532

BSNT_03198___    536 ACCCCGGGGAAAGCGAGCACCAAACAGGCCTTGCGATGGACATTTCGAGC    585
                     |.||.|||.|||||||.|||||.||.||.|||||.|||||||||||.|||
RBAM_019410__    533 ATCCGGGGCAAAGCGAACACCAGACGGGGCTTGCCATGGACATTTCCAGC    582

BSNT_03198___    586 CGGAGCAATGGCTTTGAGCTAAATGAAGCGTTCGGAAGCACGGCAGACGG    635
                     ...|||||.||.|.||||||.||||||||||||||||.||||||.|||||
RBAM_019410__    583 AAAAGCAACGGATATGAGCTGAATGAAGCGTTCGGAAACACGGCGGACGG    632

BSNT_03198___    636 GAAATGGGTGCAGGACAATGCTTATAAATATGGCTTTATCATTCGCTATC    685
                     .|||||||||.|.|||.||||.|||.||||.|||||||||||.|||||||
RBAM_019410__    633 CAAATGGGTGAAAGACCATGCGTATGAATACGGCTTTATCATCCGCTATC    682

BSNT_03198___    686 CGAAAAATAAAGAAGATATCACGAAATATGAATATGAGCCATGGCATCTG    735
                     |.|||...||||||.||.||||.||.|||||.|||||.|||||||||.|.
RBAM_019410__    683 CTAAAGGAAAAGAAAATGTCACAAAGTATGAGTATGAACCATGGCATTTA    732

BSNT_03198___    736 CGCTATGTAGGCAAAAAAGCCGCAAAGGTCATCCAAGATAATGATTTAAC    785
                     ||||||||||||||||||||.|||||.|.||||||.||..||.|.|||||
RBAM_019410__    733 CGCTATGTAGGCAAAAAAGCGGCAAAAGCCATCCATGACCATCAATTAAC    782

BSNT_03198___    786 GCTAGAAGAGTACTTTGAAAAAGTGAAGAAAATTTAA    822
                     .||.|||||.||.|||.|..||||.||||||.|.|||
RBAM_019410__    783 ACTTGAAGAATATTTTAATGAAGTAAAGAAAGTGTAA    819


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03198 and RBAM_019410

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
