Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03196 and RBAM_019390

See DNA alignment / Visit BSNT_03196 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:06
# Commandline: needle
#    -asequence pep-align/BSNT_03196___yodH.1.9828.seq
#    -bsequence pep-align/RBAM_019390___yodH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03196___yodH-RBAM_019390___yodH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03196___yodH-RBAM_019390___yodH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03196___yodH
# 2: RBAM_019390___yodH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 233
# Identity:     165/233 (70.8%)
# Similarity:   183/233 (78.5%)
# Gaps:           0/233 ( 0.0%)
# Score: 846.0
# 
#
#=======================================

BSNT_03196___      1 MSRYLEMLSLFGVAGAHPGGLAFSKAVLQKAAPSPNQPILDAGCGTGQTA     50
                     ||:||||||||||.||||||||||||||.||||.|.:|||||||||||||
RBAM_019390__      1 MSKYLEMLSLFGVGGAHPGGLAFSKAVLTKAAPPPGEPILDAGCGTGQTA     50

BSNT_03196___     51 AYLGHLLYPVTVVDKDPIMLEKAKKRFANEGLAIPAYQAELEHLPFSSES    100
                     |||||||||||.|||||:|||||.||||.|||.||.|.||||.|||:...
RBAM_019390__     51 AYLGHLLYPVTCVDKDPLMLEKAAKRFAAEGLTIPGYLAELERLPFAENQ    100

BSNT_03196___    101 FSCVLSESVLSFSRLTSSLQEISRVLKPGGMLIGIEAALKKPMPPAEKKQ    150
                     ||.|||||||:||.|.|||.||.||||||||||||||||:||||.....|
RBAM_019390__    101 FSAVLSESVLTFSNLDSSLSEILRVLKPGGMLIGIEAALQKPMPENAITQ    150

BSNT_03196___    151 MMDFYGFTCLHEESEWHKLLRSYGFQKTEAMTLLPEDMEFEPTTEMDLSQ    200
                     :.||||||.|.:|:.|.:.|...||||.:.:....|:...|||||||||.
RBAM_019390__    151 IKDFYGFTVLQDETAWKQRLLQQGFQKADFIPAAFENNAQEPTTEMDLSP    200

BSNT_03196___    201 TIDPIYYDTLQTHYQLMQLYSEYMGHCIFIAYK    233
                     .|.|::||||..||:|||.|.||||||.|:|:|
RBAM_019390__    201 VIQPVHYDTLTAHYELMQTYREYMGHCAFVAHK    233


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.