Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03196 and RBAM_019390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:07
# Commandline: needle
# -asequence dna-align/BSNT_03196___yodH.1.9828.seq
# -bsequence dna-align/RBAM_019390___yodH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03196___yodH-RBAM_019390___yodH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03196___yodH-RBAM_019390___yodH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03196___yodH
# 2: RBAM_019390___yodH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 755
# Identity: 510/755 (67.5%)
# Similarity: 510/755 (67.5%)
# Gaps: 106/755 (14.0%)
# Score: 1627.5
#
#
#=======================================
BSNT_03196___ 1 TTGAGCCGATATTTAGAAATGCTGTCCTTATTCGGTGTCGCAGGGGCGCA 50
||||||..|||||||||||||||||||||||||||.||||.||||||.||
RBAM_019390__ 1 TTGAGCAAATATTTAGAAATGCTGTCCTTATTCGGAGTCGGAGGGGCTCA 50
BSNT_03196___ 51 CCCAGGCGGACTGGCTTTTTCAAAAG-CGGTCTTGCAAAAGGCTGCACCC 99
|||.|||||.||.||||||||.|||| ||.|||..||||| ||.||.||.
RBAM_019390__ 51 CCCCGGCGGGCTCGCTTTTTCCAAAGCCGTTCTCACAAAA-GCGGCTCCT 99
BSNT_03196___ 100 TCTC----CGAATCAGCCGATTCTTGATGCCGGATGCGGAACAGGACAAA 145
.||| |||| |||||||||||.|||||.||||||||.|||||.|
RBAM_019390__ 100 CCTCCTGGCGAA----CCGATTCTTGACGCCGGCTGCGGAACGGGACAGA 145
BSNT_03196___ 146 CGGCGGCTTATTTAGGACATTTGCTGTATCCTGT-AACAGTCGTTGATAA 194
||||.||||||.|.||.||..|||||||.||.|| |.|.|| ||||||||
RBAM_019390__ 146 CGGCCGCTTATCTCGGCCACCTGCTGTACCCCGTCACCTGT-GTTGATAA 194
BSNT_03196___ 195 AGATCCTATTATGCTTGAGAAAGCGAAAAAAAGATTTGCGAATGAAGGGC 244
.|||||..||||||||||.|||||...||||.|||||||...|||| |||
RBAM_019390__ 195 GGATCCCCTTATGCTTGAAAAAGCAGCAAAACGATTTGCCGCTGAA-GGC 243
BSNT_03196___ 245 TT-GCCATCCCTGCATATCAGGCGGAGCTGGAACATCTCCCGTTTTCTTC 293
|| .||||.||.|..|||..|||||||||.||.|..||.||||| |.|
RBAM_019390__ 244 TTAACCATTCCGGGCTATTTGGCGGAGCTTGAGCGGCTTCCGTT---TGC 290
BSNT_03196___ 294 TG--AGTC-CTTTTCCTGTGTCCTGTCAGAATCGGTCCTCAGTTTTTC-A 339
|| |.|| .||||||...||.||.||.|||||.||.||||..||||| |
RBAM_019390__ 291 TGAAAATCAATTTTCCGCCGTTCTTTCCGAATCAGTTCTCACCTTTTCAA 340
BSNT_03196___ 340 CGCCTGA--CATC-CTCTCTTCAAGAAAT--TTCAAGAGTTTTAAAACCC 384
..|.||| |||| ||.||| ||||| |.| |.||..|.||||||
RBAM_019390__ 341 ATCTTGATTCATCGCTGTCT----GAAATCCTGC--GGGTCCTTAAACCC 384
BSNT_03196___ 385 GGCGGGATGCTGATTGGTATCGAAGCTGCTTTAAAAAAACCGATGCCCCC 434
||.||.||||||||.||.||.||||||||||||.||||.||.||||
RBAM_019390__ 385 GGGGGTATGCTGATCGGCATTGAAGCTGCTTTACAAAAGCCCATGC---- 430
BSNT_03196___ 435 TGCAGAAAA------GAAGCAAATGATGGATTTTTACGGATTTAC----T 474
|.||||| .|.|||.||.|..||.||.|||||.||||| |
RBAM_019390__ 431 --CGGAAAACGCCATCACGCAGATAAAAGACTTCTACGGTTTTACCGTAT 478
BSNT_03196___ 475 TGCTTACATGAAGAAAGCGAATGGCATAAACTCCTAAGA---TCCT---- 517
|| ||.||.||||..|.|||| |||| ||| |.||
RBAM_019390__ 479 TG----CAGGATGAAACGGCATGG---AAAC-----AGAGATTGCTTCAG 516
BSNT_03196___ 518 -ATGGCTTTCAAAAAACAGAAGC-GATGACACTTC-TTCCGGAAGACATG 564
|.||||||||.| |||| ||| ||| ||||.|..|.|
RBAM_019390__ 517 CAAGGCTTTCAGA------AAGCGGAT-----TTCATTCCCGCTGCC--- 552
BSNT_03196___ 565 GAATTTGAA---------------CCAACCACAGAAATGGATTTATCGCA 599
|||||| ||.||.|||||||||||||||||||
RBAM_019390__ 553 ---TTTGAAAACAATGCGCAGGAGCCGACTACAGAAATGGATTTATCGC- 598
BSNT_03196___ 600 AACG--ATTGATCCCATCTATTACGATACGCTTCAAACACATTATCAGCT 647
.|| |||.|.||..|..|.|||||||||||.....|.|||||..||||
RBAM_019390__ 599 -CCGTTATTCAGCCGGTTCACTACGATACGCTGACGGCTCATTACGAGCT 647
BSNT_03196___ 648 CATGCAGTTATATAGTGAGTACATGGGTCATTGTATTTTTATCGCGTACA 697
.||||||...||..||||.||.|||||.||.||...||||.||||..|||
RBAM_019390__ 648 TATGCAGACGTACCGTGAATATATGGGACACTGCGCTTTTGTCGCTCACA 697
BSNT_03196___ 698 AGTAA 702
|||||
RBAM_019390__ 698 AGTAA 702
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