Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03196 and RBAM_019390

See Amino acid alignment / Visit BSNT_03196 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:07
# Commandline: needle
#    -asequence dna-align/BSNT_03196___yodH.1.9828.seq
#    -bsequence dna-align/RBAM_019390___yodH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03196___yodH-RBAM_019390___yodH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03196___yodH-RBAM_019390___yodH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03196___yodH
# 2: RBAM_019390___yodH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 755
# Identity:     510/755 (67.5%)
# Similarity:   510/755 (67.5%)
# Gaps:         106/755 (14.0%)
# Score: 1627.5
# 
#
#=======================================

BSNT_03196___      1 TTGAGCCGATATTTAGAAATGCTGTCCTTATTCGGTGTCGCAGGGGCGCA     50
                     ||||||..|||||||||||||||||||||||||||.||||.||||||.||
RBAM_019390__      1 TTGAGCAAATATTTAGAAATGCTGTCCTTATTCGGAGTCGGAGGGGCTCA     50

BSNT_03196___     51 CCCAGGCGGACTGGCTTTTTCAAAAG-CGGTCTTGCAAAAGGCTGCACCC     99
                     |||.|||||.||.||||||||.|||| ||.|||..||||| ||.||.||.
RBAM_019390__     51 CCCCGGCGGGCTCGCTTTTTCCAAAGCCGTTCTCACAAAA-GCGGCTCCT     99

BSNT_03196___    100 TCTC----CGAATCAGCCGATTCTTGATGCCGGATGCGGAACAGGACAAA    145
                     .|||    ||||    |||||||||||.|||||.||||||||.|||||.|
RBAM_019390__    100 CCTCCTGGCGAA----CCGATTCTTGACGCCGGCTGCGGAACGGGACAGA    145

BSNT_03196___    146 CGGCGGCTTATTTAGGACATTTGCTGTATCCTGT-AACAGTCGTTGATAA    194
                     ||||.||||||.|.||.||..|||||||.||.|| |.|.|| ||||||||
RBAM_019390__    146 CGGCCGCTTATCTCGGCCACCTGCTGTACCCCGTCACCTGT-GTTGATAA    194

BSNT_03196___    195 AGATCCTATTATGCTTGAGAAAGCGAAAAAAAGATTTGCGAATGAAGGGC    244
                     .|||||..||||||||||.|||||...||||.|||||||...|||| |||
RBAM_019390__    195 GGATCCCCTTATGCTTGAAAAAGCAGCAAAACGATTTGCCGCTGAA-GGC    243

BSNT_03196___    245 TT-GCCATCCCTGCATATCAGGCGGAGCTGGAACATCTCCCGTTTTCTTC    293
                     || .||||.||.|..|||..|||||||||.||.|..||.|||||   |.|
RBAM_019390__    244 TTAACCATTCCGGGCTATTTGGCGGAGCTTGAGCGGCTTCCGTT---TGC    290

BSNT_03196___    294 TG--AGTC-CTTTTCCTGTGTCCTGTCAGAATCGGTCCTCAGTTTTTC-A    339
                     ||  |.|| .||||||...||.||.||.|||||.||.||||..||||| |
RBAM_019390__    291 TGAAAATCAATTTTCCGCCGTTCTTTCCGAATCAGTTCTCACCTTTTCAA    340

BSNT_03196___    340 CGCCTGA--CATC-CTCTCTTCAAGAAAT--TTCAAGAGTTTTAAAACCC    384
                     ..|.|||  |||| ||.|||    |||||  |.|  |.||..|.||||||
RBAM_019390__    341 ATCTTGATTCATCGCTGTCT----GAAATCCTGC--GGGTCCTTAAACCC    384

BSNT_03196___    385 GGCGGGATGCTGATTGGTATCGAAGCTGCTTTAAAAAAACCGATGCCCCC    434
                     ||.||.||||||||.||.||.||||||||||||.||||.||.||||    
RBAM_019390__    385 GGGGGTATGCTGATCGGCATTGAAGCTGCTTTACAAAAGCCCATGC----    430

BSNT_03196___    435 TGCAGAAAA------GAAGCAAATGATGGATTTTTACGGATTTAC----T    474
                       |.|||||      .|.|||.||.|..||.||.|||||.|||||    |
RBAM_019390__    431 --CGGAAAACGCCATCACGCAGATAAAAGACTTCTACGGTTTTACCGTAT    478

BSNT_03196___    475 TGCTTACATGAAGAAAGCGAATGGCATAAACTCCTAAGA---TCCT----    517
                     ||    ||.||.||||..|.||||   ||||     |||   |.||    
RBAM_019390__    479 TG----CAGGATGAAACGGCATGG---AAAC-----AGAGATTGCTTCAG    516

BSNT_03196___    518 -ATGGCTTTCAAAAAACAGAAGC-GATGACACTTC-TTCCGGAAGACATG    564
                      |.||||||||.|      |||| |||     ||| ||||.|..|.|   
RBAM_019390__    517 CAAGGCTTTCAGA------AAGCGGAT-----TTCATTCCCGCTGCC---    552

BSNT_03196___    565 GAATTTGAA---------------CCAACCACAGAAATGGATTTATCGCA    599
                        ||||||               ||.||.||||||||||||||||||| 
RBAM_019390__    553 ---TTTGAAAACAATGCGCAGGAGCCGACTACAGAAATGGATTTATCGC-    598

BSNT_03196___    600 AACG--ATTGATCCCATCTATTACGATACGCTTCAAACACATTATCAGCT    647
                      .||  |||.|.||..|..|.|||||||||||.....|.|||||..||||
RBAM_019390__    599 -CCGTTATTCAGCCGGTTCACTACGATACGCTGACGGCTCATTACGAGCT    647

BSNT_03196___    648 CATGCAGTTATATAGTGAGTACATGGGTCATTGTATTTTTATCGCGTACA    697
                     .||||||...||..||||.||.|||||.||.||...||||.||||..|||
RBAM_019390__    648 TATGCAGACGTACCGTGAATATATGGGACACTGCGCTTTTGTCGCTCACA    697

BSNT_03196___    698 AGTAA    702
                     |||||
RBAM_019390__    698 AGTAA    702


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