Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03139 and RBAM_019000

See DNA alignment / Visit BSNT_03139 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence pep-align/BSNT_03139___yocM.1.9828.seq
#    -bsequence pep-align/RBAM_019000___yocM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03139___yocM-RBAM_019000___yocM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03139___yocM-RBAM_019000___yocM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03139___yocM
# 2: RBAM_019000___yocM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 161
# Identity:      97/161 (60.2%)
# Similarity:   118/161 (73.3%)
# Gaps:           4/161 ( 2.5%)
# Score: 496.5
# 
#
#=======================================

BSNT_03139___      1 MDFEKMKQWMEFAQQMYGGDFWKQVFDEDQKTPFMTNGQSPFPFAQQD-Q     49
                     |||:|||||||.||.|.||||||.|||::|...|. ||.|.|||.|.| |
RBAM_019000__      1 MDFDKMKQWMEMAQNMSGGDFWKNVFDDEQLKSFQ-NGHSHFPFQQGDGQ     49

BSNT_03139___     50 RGKGDASFPSMDIVDTVTEVQFLIYLPGYRKQDVHILSYGDYLVVKGQRF     99
                     ..:.:.:||.:|||:|..|:|||:||||||||||.:||||:|:||||.|.
RBAM_019000__     50 MRRNEDAFPLIDIVETHDELQFLLYLPGYRKQDVQLLSYGEYIVVKGTRK     99

BSNT_03139___    100 SYFNEQDFRQKEGRYGSFEKKIPLSDHLHGK--MNAIFKDGILYITIQKD    147
                     |:||||||:||.|:||.||||:.|.....|.  |.|:||||||||:|.|.
RBAM_019000__    100 SFFNEQDFKQKTGKYGDFEKKLDLPHSAQGTKGMQAVFKDGILYISIAKH    149

BSNT_03139___    148 EGQAKTIVIDD    158
                     .|.|..|:|:.
RBAM_019000__    150 LGDASQIIIEG    160


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