Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03139 and RBAM_019000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_03139___yocM.1.9828.seq
# -bsequence dna-align/RBAM_019000___yocM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03139___yocM-RBAM_019000___yocM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03139___yocM-RBAM_019000___yocM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03139___yocM
# 2: RBAM_019000___yocM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 511
# Identity: 344/511 (67.3%)
# Similarity: 344/511 (67.3%)
# Gaps: 62/511 (12.1%)
# Score: 1079.0
#
#
#=======================================
BSNT_03139___ 1 ATGGATTTCGAAAAGATGAAGCAGTGGATGGAATTCGCACAGCAGATGTA 50
|||||||||||.|||||||||||||||||||||.|.||.||..|.||||.
RBAM_019000__ 1 ATGGATTTCGATAAGATGAAGCAGTGGATGGAAATGGCGCAAAACATGTC 50
BSNT_03139___ 51 CGGCGGTGACTTTTGGAAACAGGTATTTGATGAAGACCAA---AAAACCC 97
||||||.||||||||||||.|.||.||||||||.||.||| ||| .|
RBAM_019000__ 51 CGGCGGCGACTTTTGGAAAAACGTTTTTGATGATGAACAACTGAAA--TC 98
BSNT_03139___ 98 CTTTTATGACAAATGGCCAATCTCCGTTTCCGTTTGCGCAGCAAGATCAG 147
.|||.| |||.|||||.||||..|||||.|||...|||..||||..|
RBAM_019000__ 99 ATTTCA----AAACGGCCATTCTCATTTTCCCTTTCAACAGGGAGATGGG 144
BSNT_03139___ 148 C----GAG-GGAAAGGA-GATGCTTCATTTCCGAGCATGGATATTGTAGA 191
| ||| .||||.|| |||||| |||||....||.||||||||.||
RBAM_019000__ 145 CAAATGAGAAGAAATGAGGATGCT---TTTCCTCTTATAGATATTGTGGA 191
BSNT_03139___ 192 TACCGTTACGGAAGTACAATTTTTAATTTATCTTCCAGGCTACCGTAAAC 241
.|||..|...||..|.|||||||||.|.|||||.||.||||||||.||||
RBAM_019000__ 192 AACCCATGATGAGCTCCAATTTTTACTGTATCTGCCCGGCTACCGGAAAC 241
BSNT_03139___ 242 AAGACGTTCACATATTATCGTACGGAGATTATTTAGTGGTGAAGGGGCA- 290
||||.|||||..|..|.||.||||||||.|||.|.||.|| ||..||||
RBAM_019000__ 242 AAGATGTTCAGCTGCTGTCCTACGGAGAATATATCGTCGT-AAAAGGCAC 290
BSNT_03139___ 291 GCGCTTTTCCTATTTTAATGAACAGGACTTTCGCCAAAAAGAA----GGG 336
|.|....||||.|||||||||||||||.||| |||.|||| ||.
RBAM_019000__ 291 GAGAAAATCCTTTTTTAATGAACAGGATTTT----AAACAGAAGACCGGA 336
BSNT_03139___ 337 AGATACGGAAGTTTTGAAAAGAAAA-------TTCCGCTTTCCGATCATC 379
|.||||||...||||||||| |||| ||||||.|||||
RBAM_019000__ 337 AAATACGGCGATTTTGAAAA-AAAACTCGACCTTCCGCATTCCG------ 379
BSNT_03139___ 380 TTCATGGAAAGA--TGAATGCCA-----TTTTTAAAGACGGAATCCTATA 422
.|||.||||.|| .||||| || |.||.||||||||.||..||||
RBAM_019000__ 380 CTCAGGGAACGAAGGGAATG-CAGGCGGTATTCAAAGACGGGATTTTATA 428
BSNT_03139___ 423 CATCACTATTCAAAAA------GACGAAGGTCAAGCGAAAACCATTGTTA 466
.||..|.|||...||| |..||.| |||||.| .||..|||
RBAM_019000__ 429 TATATCGATTGCTAAACATCTGGGGGATG--CAAGCCA----GATCATTA 472
BSNT_03139___ 467 TTGATGATTGA 477
|.||.|..|||
RBAM_019000__ 473 TCGAAGGCTGA 483
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