Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03130 and RBAM_018960

See DNA alignment / Visit BSNT_03130 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence pep-align/BSNT_03130___yocH.1.9828.seq
#    -bsequence pep-align/RBAM_018960___yocH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03130___yocH-RBAM_018960___yocH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03130___yocH-RBAM_018960___yocH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03130___yocH
# 2: RBAM_018960___yocH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 294
# Identity:     226/294 (76.9%)
# Similarity:   251/294 (85.4%)
# Gaps:          12/294 ( 4.1%)
# Score: 1102.0
# 
#
#=======================================

BSNT_03130___      1 MKKTIMSFVAVAALSTTAFGAHASAKEITVQKGDTLWGISQKNGVNLKDL     50
                     |||||||||||||:||||||||||||||||||||||||||||||||||||
RBAM_018960__      1 MKKTIMSFVAVAAISTTAFGAHASAKEITVQKGDTLWGISQKNGVNLKDL     50

BSNT_03130___     51 KEWNKLTSDKIIAGEKLTISSEETTTTGQYTIKAGDTLSKIAQKFGTTVN    100
                     ||||:|:||.||.||||||||.||||:||||:|.||:|.||||||||:|.
RBAM_018960__     51 KEWNQLSSDLIIEGEKLTISSVETTTSGQYTVKQGDSLWKIAQKFGTSVG    100

BSNT_03130___    101 NLKVWNNLSSDMIYAGSTLSVKGQATAANTATE--NAQTNAPQAA----P    144
                     |||..|||.||:||||:||:|||||.||..|.|  :.||....||    |
RBAM_018960__    101 NLKSLNNLQSDIIYAGTTLNVKGQAQAAQPAQEASHPQTEQKPAAETEQP    150

BSNT_03130___    145 KQEAVQKEQPKQEAVQ-QQPKQETKAEAETSVNTEEKAVQSNTNNQEASK    193
                     |||||:.||||||.|| ||||||.||     |..:::.||||||.||..|
RBAM_018960__    151 KQEAVKNEQPKQEPVQEQQPKQEAKA-----VEAKQQPVQSNTNQQEPKK    195

BSNT_03130___    194 ELTVTATAYTANDGGISGVTATGIDLNKNPNAKVIAVDPNVIPLGSKVYV    243
                     :||:|||||:|||||||||||||:||||||:||||||||:||||||||||
RBAM_018960__    196 QLTMTATAYSANDGGISGVTATGVDLNKNPDAKVIAVDPSVIPLGSKVYV    245

BSNT_03130___    244 EGYGEATAGDTGGAIKGNKIDVFVPSKSDASNWGVKTVNVKILN    287
                     ||||.|||.|||||||||||||||..||||:||||:|||||:|:
RBAM_018960__    246 EGYGVATAADTGGAIKGNKIDVFVAKKSDANNWGVRTVNVKVLD    289


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