Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03130 and RBAM_018960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03130___yocH.1.9828.seq
# -bsequence dna-align/RBAM_018960___yocH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03130___yocH-RBAM_018960___yocH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03130___yocH-RBAM_018960___yocH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03130___yocH
# 2: RBAM_018960___yocH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 907
# Identity: 697/907 (76.8%)
# Similarity: 697/907 (76.8%)
# Gaps: 80/907 ( 8.8%)
# Score: 2697.0
#
#
#=======================================
BSNT_03130___ 1 ATGAAGAAGACGATTATGTCCTTTGTGGCAGTTGCTGCACTTTCAACAAC 50
||||||||||||||||||||||||||.||||||||.|||.||||||||||
RBAM_018960__ 1 ATGAAGAAGACGATTATGTCCTTTGTCGCAGTTGCAGCAATTTCAACAAC 50
BSNT_03130___ 51 TGCATTCGGAGCTCACGCTTCTGCAAAAGAAATTACGGTGCAAAAGGGTG 100
||||||.|||||||||||||||||.||||||||.||||||||||||||||
RBAM_018960__ 51 TGCATTTGGAGCTCACGCTTCTGCTAAAGAAATCACGGTGCAAAAGGGTG 100
BSNT_03130___ 101 ATACGCTCTGGGGAATCTCTCAGAAAAATGGAGTGAACCTAAAGGACTTA 150
|.|||||||||||.|||||.||.|||||.|||||||||||||||||||||
RBAM_018960__ 101 ACACGCTCTGGGGGATCTCGCAAAAAAACGGAGTGAACCTAAAGGACTTA 150
BSNT_03130___ 151 AAAGAATGGAACAAGTTAACTTCTGATAAAATCATTGCAGGAGAAAAACT 200
|||||||||||..|||||.||||||||..||||||||.||||||.|||||
RBAM_018960__ 151 AAAGAATGGAATCAGTTATCTTCTGATTTAATCATTGAAGGAGAGAAACT 200
BSNT_03130___ 201 GACCATTTCTTCAGAAGAAACAACCACGACTGGGCAATATACAATTAAAG 250
|||.||||||||||.||||||||||||..|||||||.||.|| |.|.|||
RBAM_018960__ 201 GACTATTTCTTCAGTAGAAACAACCACATCTGGGCAGTACAC-AGTGAAG 249
BSNT_03130___ 251 C-GGGAGATACGCTTTCTAAGATTGCTCAAAAATTCGGCACGACAGTCAA 299
| |||.||.|..||.|..||.||||||||.||||||||.||..|||||..
RBAM_018960__ 250 CAGGGCGACAGCCTCTGGAAAATTGCTCAGAAATTCGGAACATCAGTCGG 299
BSNT_03130___ 300 CAACCTG-AAAGTTTGGAATAACTTAAGC--TCTGACATGATCTATGCTG 346
|||.||| ||||.|| ||||||||| || ||.||.||.||.||.||.|
RBAM_018960__ 300 CAATCTGAAAAGCTT-GAATAACTT--GCAATCAGATATAATTTACGCAG 346
BSNT_03130___ 347 GATCAACTCTTTCA--GTAAAAGGTCAGGC--------AACAGCAG---C 383
|..||| |.||.| ||.||||||||||| .|||||.| |
RBAM_018960__ 347 GCACAA--CGTTAAATGTGAAAGGTCAGGCTCAGGCTGCACAGCCGGCTC 394
BSNT_03130___ 384 A--AACACAGCTACTGAGAATGCGCAAAC------AAACGCACCTCAAGC 425
| ||..|||| .||.||||||| ||| ||| |||
RBAM_018960__ 395 AAGAAGCCAGC-------CATCCGCAAACTGAACAAAA---ACC---AGC 431
BSNT_03130___ 426 TGC------------GCCAAAACAAGAGGCTGTGCAAAAA-GAGCAACCT 462
||| |||.||||||||.||||| |||||| |||||.|||
RBAM_018960__ 432 TGCCGAGACAGAACAGCCGAAACAAGAAGCTGT-CAAAAACGAGCAGCCT 480
BSNT_03130___ 463 AAACAAGAAGCTGT---ACAACAGCAACCTAAACAAGAAACAAAAGCTGA 509
|||||||||.|||| |.||||.|||||||||||||||.|.||.||||.
RBAM_018960__ 481 AAACAAGAACCTGTTCAAGAACAACAACCTAAACAAGAAGCGAAGGCTGT 530
BSNT_03130___ 510 GGCAGAAACTTCTGTTAACACAGAAGAGAAGGCTGTTCAATCAAATACAA 559
.|.|| ||.||.||.||.||||||||||||||||||
RBAM_018960__ 531 CGAAG---------------CAAAACAGCAGCCTGTTCAATCAAATACAA 565
BSNT_03130___ 560 ATAATCAAGAAGCTTCAAAAG-AACTAACAGTTACTGCTACTGCTTACAC 608
|..|.|||| |||.|.||||| |.||.|||.|.|||||.|||||||||.|
RBAM_018960__ 566 ACCAACAAG-AGCCTAAAAAGCAGCTGACAATGACTGCAACTGCTTACTC 614
BSNT_03130___ 609 TGCTAACGACGGCGGCATTTCCGGCGTTACAGCTACAGGCATTGACTTAA 658
||||||||||||||||||||||||.||.||.||.||.||..|||||||||
RBAM_018960__ 615 TGCTAACGACGGCGGCATTTCCGGTGTAACGGCAACCGGTGTTGACTTAA 664
BSNT_03130___ 659 ATAAGAACCCGAACGCGAAAGTTATTGCGGTTGATCCTAATGTAATTCCG 708
|.||.|||||..|.||.|||||.||.|||||.||.||||.|||.||||||
RBAM_018960__ 665 ACAAAAACCCTGATGCAAAAGTCATCGCGGTAGACCCTAGTGTCATTCCG 714
BSNT_03130___ 709 CTAGGTTCTAAAGTTTATGTTGAAGGCTACGGGGAAGCAACAGCAGGAGA 758
||.||.|||||.||||||||||||||.|||||.|..||||||||||.|||
RBAM_018960__ 715 CTTGGCTCTAAGGTTTATGTTGAAGGTTACGGAGTGGCAACAGCAGCAGA 764
BSNT_03130___ 759 CACTGGCGGCGCTATTAAAGGAAATAAAATCGACGTATTTGTACCAAGTA 808
.||.||||||||.|||||||||||||||||.|||||||||||..|||..|
RBAM_018960__ 765 TACAGGCGGCGCAATTAAAGGAAATAAAATTGACGTATTTGTTGCAAAGA 814
BSNT_03130___ 809 AAAGTGATGC-ATCTAATTGGGGCGTCAAAACTGTAAATGTTAAAATCTT 857
|||||||.|| |.| ||.||||||||||.|||.||||||||||||.|.||
RBAM_018960__ 815 AAAGTGACGCTAAC-AACTGGGGCGTCAGAACAGTAAATGTTAAAGTATT 863
BSNT_03130___ 858 AAACTAA 864
|.||||.
RBAM_018960__ 864 AGACTAG 870
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