Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03103 and RBAM_018850

See DNA alignment / Visit BSNT_03103 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:58
# Commandline: needle
#    -asequence pep-align/BSNT_03103___yobQ.1.9828.seq
#    -bsequence pep-align/RBAM_018850___yobQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03103___yobQ-RBAM_018850___yobQ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03103___yobQ-RBAM_018850___yobQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03103___yobQ
# 2: RBAM_018850___yobQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 243
# Identity:     143/243 (58.8%)
# Similarity:   183/243 (75.3%)
# Gaps:          11/243 ( 4.5%)
# Score: 751.5
# 
#
#=======================================

BSNT_03103___      1 MDSLQEMICEKRTYTRLYHSHKHAYSQFLFPLEGSIDLETEERQVKLKPD     50
                     |||||.:|||:|||:.::.||.|.|.|.||||||.:|||||.|:::||||
RBAM_018850__      1 MDSLQHIICERRTYSHIFDSHAHTYCQMLFPLEGQLDLETERRKIRLKPD     50

BSNT_03103___     51 HFLYIPPECEHRFRSIGRNECLVLDVPLHAMKIDEYRAGS---GIEAALD     97
                     ..|||||..||||||:.||||||||:|.:..|      ||   |:...||
RBAM_018850__     51 QMLYIPPGHEHRFRSLERNECLVLDIPAYFFK------GSFAPGVLNKLD     94

BSNT_03103___     98 PFWSSIRYLLTEEAKAGTANSLHMLVQYIKEKLQ-SHSYASIAYIHSHLF    146
                     |||:|||:|||||.|..:|:||.:|.:||.||:| :.:..|||||..:|.
RBAM_018850__     95 PFWTSIRFLLTEETKQQSAHSLSLLAEYIAEKIQENRTNDSIAYIRRNLS    144

BSNT_03103___    147 ERLTIKKLAEIEHYHPAYYSSWFKKQTGKSPQNYIADLRLEEAKRMLMER    196
                     :..|||:||.:|||||||||.|||||||||||.|||:||:::|::||:|.
RBAM_018850__    145 KTFTIKELAAMEHYHPAYYSDWFKKQTGKSPQAYIAELRMKKAEQMLIET    194

BSNT_03103___    197 NETLTVVSEALGFQNLSSFTRWFTKSTGMPPRLYRNTLYSDKK    239
                     ...||.:|:.:||||||||||||.:..|:.||::|||..||| 
RBAM_018850__    195 KCRLTDISQEVGFQNLSSFTRWFVRHKGITPRVFRNTFQSDK-    236


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