Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03103 and RBAM_018850

See Amino acid alignment / Visit BSNT_03103 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:58
# Commandline: needle
#    -asequence dna-align/BSNT_03103___yobQ.1.9828.seq
#    -bsequence dna-align/RBAM_018850___yobQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03103___yobQ-RBAM_018850___yobQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03103___yobQ-RBAM_018850___yobQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03103___yobQ
# 2: RBAM_018850___yobQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 785
# Identity:     487/785 (62.0%)
# Similarity:   487/785 (62.0%)
# Gaps:         139/785 (17.7%)
# Score: 1398.5
# 
#
#=======================================

BSNT_03103___      1 ATGGATTCGCTTCAAGAGATGATTTGCGAAAAACGGACATACACACGCCT     50
                     ||||||||..|.|||.|.||.|||||.||....||.||.||..|||...|
RBAM_018850__      1 ATGGATTCATTACAACATATCATTTGTGAGCGGCGCACCTATTCACATAT     50

BSNT_03103___     51 TTATCATTCACATAAGCACGCATACAGCCAATTTCTTTTTCCGCTTGAAG    100
                     ||.|.||||.|||...|||.|||||.|.|||.|.||.||||||||.||||
RBAM_018850__     51 TTTTGATTCTCATGCACACACATACTGTCAAATGCTCTTTCCGCTCGAAG    100

BSNT_03103___    101 G-GAGTATTGATCTTGAGACTGAAGAGCGCCAGGTGAA-----ATTAAAG    144
                     | .|| .|.||.||.|||||.||| ||    |.||.||     ||||||.
RBAM_018850__    101 GACAG-CTGGACCTGGAGACAGAA-AG----ACGTAAAATCAGATTAAAA    144

BSNT_03103___    145 CCAGATCATTTTTTATATATTCCGCCGGAGTGCGAGCATCGTTTCCGTTC    194
                     ||.|||||..|.||.|||||||||||.|.|...||.|||||.||||||||
RBAM_018850__    145 CCTGATCAAATGTTGTATATTCCGCCTGGGCATGAACATCGGTTCCGTTC    194

BSNT_03103___    195 TATCGGA-AGAAATGAATGTCTTGTACTGGATGTTCCGCTTCATGCA-AT    242
                     | |.||| .|||||||||||||.||.||.||..|.|||      ||| ||
RBAM_018850__    195 T-TTGGAGCGAAATGAATGTCTCGTTCTCGACATACCG------GCATAT    237

BSNT_03103___    243 GAAAATTGATGAGTATC----GTGCAGGAT-------CGG------GAAT    275
                          ||      |.||    ||.|   ||       |||      ||||
RBAM_018850__    238 -----TT------TTTCAAAGGTTC---ATTTGCCCCCGGCGTTCTGAAT    273

BSNT_03103___    276 TGAAGCTGCACTCGATCCTTTCTGGTCTTCGATCAGGTACTTGCTGACAG    325
                       |||     ||.||||||||.|||.|.|||||..|||...|||||||||
RBAM_018850__    274 --AAG-----CTTGATCCTTTTTGGACATCGATTCGGTTTCTGCTGACAG    316

BSNT_03103___    326 AGGAAGCAAAGGCCGGAACAGCCAACTCGCTTCA---------TATGCTA    366
                     |.||..|||||       ||||  |.|||..|||         |.||||.
RBAM_018850__    317 AAGAGACAAAG-------CAGC--AATCGGCTCATTCATTGAGTCTGCTT    357

BSNT_03103___    367 GTACAATACAT-----AAAAG--AAAAGCTTCAATCCCATAGCTATGCCT    409
                     |.|.||||.||     |||||  |.|||    ||..||.||...|||..|
RBAM_018850__    358 GCAGAATATATTGCTGAAAAGATACAAG----AAAACCGTACAAATGATT    403

BSNT_03103___    410 CAATTGCATACAT-------------TCACAGCCATTTATTTGAGCGGCT    446
                     |||||||.||.||             |||.||.|.|||            
RBAM_018850__    404 CAATTGCGTATATCCGCCGAAATCTCTCAAAGACTTTT------------    441

BSNT_03103___    447 GACGATTAAGAAGCTGGCAGAAATCGAGCATTATCACCCAGCTTACTATT    496
                      ||.|||||..||||.||.|.|||.||.|||||.|||||.||.||.||||
RBAM_018850__    442 -ACAATTAAAGAGCTTGCCGCAATGGAACATTACCACCCGGCGTATTATT    490

BSNT_03103___    497 CAAGCTGGTTCAAAAAACAGACAGGGAAGTCCCCGCAGAAC-TATATTGC    545
                     |...||||||.|||||.|||||.|||||...|||||| |.| ||||||||
RBAM_018850__    491 CCGACTGGTTTAAAAAGCAGACGGGGAAAAGCCCGCA-AGCTTATATTGC    539

BSNT_03103___    546 CGACCTTCGCCTTGAGGAAGCAAAACGAATGCTGATGGAGA-GAAATGAA    594
                     .||.||.||..|..||.||||..|||.||||||.||.||.| .|||||  
RBAM_018850__    540 TGAGCTCCGTATGAAGAAAGCGGAACAAATGCTTATTGAAACAAAATG--    587

BSNT_03103___    595 ACC--CTTACCGTCGTGAGCGAGGCGCTGGGCTTTCAAAACCTTTCTTCT    642
                      ||  ||.||.|.|.|.||..|||.|.|.|||||||||||..|.|||||.
RBAM_018850__    588 -CCGGCTGACAGACATCAGTCAGGAGGTCGGCTTTCAAAATTTGTCTTCC    636

BSNT_03103___    643 TTTACAAGATGGTT-----CACGAAAAGCACAGGAATGCCGCCCCGCCTG    687
                     |||||.||||||||     .|| |.|||    |||||..||  ||||.||
RBAM_018850__    637 TTTACCAGATGGTTTGTCAGAC-ATAAG----GGAATAACG--CCGCGTG    679

BSNT_03103___    688 TAT--CGAAACACCTTATATTCGGATAAAAAATGA    720
                     |.|  |||||||||||..|.||.||||||.||   
RBAM_018850__    680 TCTTCCGAAACACCTTTCAATCTGATAAATAA---    711


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03103 and RBAM_018850

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
