Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03016 and RBAM_018350

See DNA alignment / Visit BSNT_03016 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence pep-align/BSNT_03016___yngG.1.9828.seq
#    -bsequence pep-align/RBAM_018350___yngG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03016___yngG-RBAM_018350___yngG.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03016___yngG-RBAM_018350___yngG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03016___yngG
# 2: RBAM_018350___yngG
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 299
# Identity:     205/299 (68.6%)
# Similarity:   244/299 (81.6%)
# Gaps:           0/299 ( 0.0%)
# Score: 1087.0
# 
#
#=======================================

BSNT_03016___      1 MSYPKKVKIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSF     50
                     |:.||.|:|.|||||||||||..|:.|||||.|||.||:|||.|||:|||
RBAM_018350__      1 MNCPKHVRINEVGPRDGLQNESAWVDTEDKIEWINMLSKTGLPYIEVTSF     50

BSNT_03016___     51 VHPKWIPALRDAIDVAKGIDRLKGVTYAALVPNQRGLENALEGGINEACV    100
                     |||:|||||||::||||||.|.:...|||||||..|||:|.||||::|||
RBAM_018350__     51 VHPRWIPALRDSLDVAKGIARSEHTVYAALVPNLIGLEHAAEGGIDQACV    100

BSNT_03016___    101 FMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPY    150
                     |:|||||||:||:||....::..|::|..:|:...:.|||||||||||||
RBAM_018350__    101 FLSASETHNQKNVNKPIDRTVQELRRVITEAKAEKMATRAYLSTVFGCPY    150

BSNT_03016___    151 EKDVPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFP    200
                     |::||||||||||:.|.|.|:.|:|||||||||||.||..||||||.|.|
RBAM_018350__    151 EQNVPIEQVIRLSDTLLEMGVDEISLGDTIGAANPLQVIAVLEALLPRIP    200

BSNT_03016___    201 ANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNA    250
                     |.:|||||||||||||||::.||.||||.||.|:||||||||||||:|||
RBAM_018350__    201 AIKIALHFHDTRGTALANIIPALDMGITSFDTSSGGLGGCPYAPGSAGNA    250

BSNT_03016___    251 ATEDIVYMLEQMDIKTNVKLEKLLSAAKWIEEKMGKPLPSRNLQVFKSS    299
                     ||||::||||||.|.|...:.|||.||.||.:|:||.|||||||.|::.
RBAM_018350__    251 ATEDVIYMLEQMGIDTGTDMNKLLYAAGWIADKIGKDLPSRNLQAFRTK    299


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