Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03016 and RBAM_018350

See Amino acid alignment / Visit BSNT_03016 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence dna-align/BSNT_03016___yngG.1.9828.seq
#    -bsequence dna-align/RBAM_018350___yngG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03016___yngG-RBAM_018350___yngG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03016___yngG-RBAM_018350___yngG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03016___yngG
# 2: RBAM_018350___yngG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity:     623/938 (66.4%)
# Similarity:   623/938 (66.4%)
# Gaps:          76/938 ( 8.1%)
# Score: 1924.5
# 
#
#=======================================

BSNT_03016___      1 ATGTCATATCCTAAAAAAGTGAAAATCAAAGAAGTCGGCCCGCGTGACGG     50
                     |||...|.|||.|||.|.||....|||||.|||||.||.|||||||||||
RBAM_018350__      1 ATGAACTGTCCGAAACATGTCCGCATCAATGAAGTAGGACCGCGTGACGG     50

BSNT_03016___     51 CTTACAAAACGA----GCCCGTATGGATCGCAACAGAGGATAAAATAACC     96
                     |||.||.||.||    ||..|..|||||    |||||.|||||.||....
RBAM_018350__     51 CTTGCAGAATGAATCGGCGTGGGTGGAT----ACAGAAGATAAGATTGAG     96

BSNT_03016___     97 TGGATCAACCAGCTTTCCCGGACAGGGCTTTCGTATATTGAAATCACATC    146
                     ||||||||...|||.||....|||||.|||.|.|||||.|||.|.|||||
RBAM_018350__     97 TGGATCAATATGCTGTCAAAAACAGGCCTTCCCTATATCGAAGTGACATC    146

BSNT_03016___    147 CTTCGTTCACCCGAAATGGATTCCGGCGCTTCGAGA-----TGCTATCGA    191
                     .|||||.||.||||.||||||||||||.|||||.||     ||     ||
RBAM_018350__    147 ATTCGTGCATCCGAGATGGATTCCGGCTCTTCGTGACAGCCTG-----GA    191

BSNT_03016___    192 CGTAGCAAAAGGCATCGACCG--TTTAAAAGGGGTAACG---TACGCGGC    236
                     |||.|||||||||||.|.|.|  .|.||.|     .|||   ||||||||
RBAM_018350__    192 CGTCGCAAAAGGCATTGCCAGATCTGAACA-----TACGGTCTACGCGGC    236

BSNT_03016___    237 ACTTGTCCCGAATCAAAGAGGATTGGAGAATGCGCTTGAAGGAGGCATTA    286
                     .||.||.|||||.|..|..|||.|||||.|||||...|||||.||.||..
RBAM_018350__    237 TCTCGTTCCGAACCTCATCGGACTGGAGCATGCGGCAGAAGGCGGAATCG    286

BSNT_03016___    287 ACGAGGCTTGCGTTTTTATGTCCGCCAGCGAGACGCACAACAGAAAAAAC    336
                     |..||||.||.||.|||.|.||.||.|||||.||.||.|||..|||||||
RBAM_018350__    287 ATCAGGCATGTGTATTTTTATCTGCAAGCGAAACCCATAACCAAAAAAAC    336

BSNT_03016___    337 ATCAATAAATCCACTT---CTGAATCCCTTCATATA-CTCAAACAAGTAA    382
                     .|.||.||| ||..||   |.||  ||.|||| |.| ||||..|..||.|
RBAM_018350__    337 GTAAACAAA-CCGATTGACCGGA--CCGTTCA-AGAGCTCAGGCGGGTTA    382

BSNT_03016___    383 ACAACGACGCACAAAAAGC---AAACCTCACAACAAGAGCCTACCTCTCG    429
                     ..|..||.||   ||||||   |||..|..|.||.|||||.||.||.||.
RBAM_018350__    383 TTACTGAAGC---AAAAGCTGAAAAAATGGCGACGAGAGCTTATCTGTCC    429

BSNT_03016___    430 ACTGTTTTCGGCTGTCCGTACGAAAAAGATGTCCCCATTGAACAAGTCAT    479
                     |||||.||||||||||||||||||.|..|.||.||.||.|||||||||||
RBAM_018350__    430 ACTGTGTTCGGCTGTCCGTACGAACAGAACGTGCCGATCGAACAAGTCAT    479

BSNT_03016___    480 TCGCCTTTCAGAAGCTCTATTTGAATTTGGGATTTCTGAACTTTCGCTTG    529
                     .|||||.|||||..|.||..|.|||.|.||..||..||||.|.|||||.|
RBAM_018350__    480 CCGCCTGTCAGACACCCTGCTCGAAATGGGTGTTGATGAAATATCGCTCG    529

BSNT_03016___    530 GAGATACGATTGGAGCGGCTAATCCCGCCCAAGTGGAAACTGTACTTGAA    579
                     |.||.||.||.||.|||||.||.|||...||.||...|.|.||.||||||
RBAM_018350__    530 GCGACACAATCGGCGCGGCAAACCCCTTGCAGGTCATAGCCGTGCTTGAA    579

BSNT_03016___    580 GCTCTTTTGGC-ACGATTCCCGGC-TAATCAAATTGCCTTGCATTTTCAT    627
                     ||.||||||.| |..|||||||.| |||  ||||.||..|.|||||.|||
RBAM_018350__    580 GCCCTTTTGCCGAGAATTCCCGCCATAA--AAATCGCACTCCATTTCCAT    627

BSNT_03016___    628 GATACGAGAGGAACCGCTCTGGCCAACATGGTCACAGCACTCCAAATGGG    677
                     |||||.||||||||.|||||.||.||.||..|..|.||.||..|.|||||
RBAM_018350__    628 GATACAAGAGGAACGGCTCTAGCGAATATCATTCCCGCTCTTGATATGGG    677

BSNT_03016___    678 CATCACGGTGTTTGACGGCTCGGCAGGCGGGCTTGGGGGATGCCCATATG    727
                     ||||||....|||||....||..||||.||||||||.||.|||||.||.|
RBAM_018350__    678 CATCACATCCTTTGATACTTCCTCAGGGGGGCTTGGCGGCTGCCCGTACG    727

BSNT_03016___    728 CGCCAGGTTCATCAGGAAACGCCGCAACTGAGGATATCGTGTACATGCTT    777
                     |.||.||.|||.||||||||||.||.||.||.||..||.|.||.|||||.
RBAM_018350__    728 CCCCTGGATCAGCAGGAAACGCTGCCACAGAAGACGTCATTTATATGCTC    777

BSNT_03016___    778 GAACAGATGGATATCAAAAC--------AAATGTAAAGCTAGAA-AAACT    818
                     |||||.||||..||..|.||        |.||         ||| |||||
RBAM_018350__    778 GAACAAATGGGGATTGATACCGGGACGGACAT---------GAATAAACT    818

BSNT_03016___    819 GCTATCTGCGGCCAAATGGATAGAAGAAAAAATGGGCAAACCGCTGCCGA    868
                     .||.|.|||.|||...|||||.|..||.|||||.||||||...|||||.|
RBAM_018350__    819 TCTTTATGCCGCCGGCTGGATCGCGGATAAAATAGGCAAAGACCTGCCAA    868

BSNT_03016___    869 GCAGAAATTTACAGGTGTT------TAAATCATCTTGA    900
                     |||||||..|.||||..||      .||||.|      
RBAM_018350__    869 GCAGAAACCTGCAGGCATTCAGAACGAAATGA------    900


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03016 and RBAM_018350

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
