Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05966 and RBAM_018220

See DNA alignment / Visit BSNT_05966 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:28
# Commandline: needle
#    -asequence pep-align/BSNT_05966___scoA.1.9828.seq
#    -bsequence pep-align/RBAM_018220___scoA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05966___scoA-RBAM_018220___scoA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05966___scoA-RBAM_018220___scoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05966___scoA
# 2: RBAM_018220___scoA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 240
# Identity:     194/240 (80.8%)
# Similarity:   214/240 (89.2%)
# Gaps:           9/240 ( 3.8%)
# Score: 1019.0
# 
#
#=======================================

BSNT_05966___      1 --MGKVLSSSKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQGVKDLT     48
                       .|||:.|.::||.||.|||||||||||||||||||||:|||.|||:||
RBAM_018220__      1 MGKGKVMDSYQDAAALIKDGDTLIAGGFGLCGIPEQLILAIRDSGVKNLT     50

BSNT_05966___     49 VVSNNCGVDDWGLGLLLANKQIKKMIASYVGENKIFERQFLSGELEVELV     98
                     |||||||||||||||||||:|||||:||||||||.|||||||||||||||
RBAM_018220__     51 VVSNNCGVDDWGLGLLLANRQIKKMVASYVGENKTFERQFLSGELEVELV    100

BSNT_05966___     99 PQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGIT    148
                     |||||||||||||||||.|||..|||||:|||||||||.||||:||:|||
RBAM_018220__    101 PQGTLAERIRAGGAGIPAFYTPAGVGTSVAEGKEHKTFDGRTYLLEKGIT    150

BSNT_05966___    149 GDVAIVKAWKADTMGNLVFRKTARNFNPIAAMAGKITIAEAEEIVEAGEL    198
                     |:.|||||||||.:|||:||||||||||:||||||:|||||||||:||||
RBAM_018220__    151 GNAAIVKAWKADPLGNLMFRKTARNFNPLAAMAGKVTIAEAEEIVDAGEL    200

BSNT_05966___    199 DPDHIHTPGIYVQHVVLGASQEKRIEKRTVQQASGKGEAK    238
                     |||.||||||:||||:||...|||||:|||:||       
RBAM_018220__    201 DPDQIHTPGIFVQHVLLGGIHEKRIERRTVRQA-------    233


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